Basic Information
Locus ID:
gene-LOC103712026
Species & Taxonomic ID:
Phoenix dactylifera & 42345
Genome Assembly:
GCF_009389715.1
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold000204F | 185081 | 194184 | + | gene-LOC103712026 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.94 | 43,087.07 Da | 41.16 | 93.98 | -0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 154 | 187 | 0.15 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 122 | 143 | 0.0087 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 68 | 313 | 7.33E-34 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 8 | 324 | 1.1E-47 | IPR015943 |
| SMART | SM00320 | WD40_4 | 149 | 187 | 0.38 | IPR001680 |
| SMART | SM00320 | WD40_4 | 190 | 235 | 240.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 238 | 277 | 22.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 110 | 145 | 0.63 | IPR001680 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G52190.1 | phosphate transporter traffic facilitator1. Encodes a plant specific protein structurally related to the SEC12 proteins of the early secretory pathway. Mutation of PHF1 impairs Pi transport. Expression was detected in all tissues, and was induced by Pi starvation. Localized in endoplasmic reticulum (ER), and mutation of PHF1 resulted in ER retention and reduced accumulation of the plasma membrane PHT1;1 transporter. | 0 |
| RefSeq | XP_008796618.2 | SEC12-like protein 1 isoform X1 [Phoenix dactylifera] | 0 |
| Q8GYE0 | SEC12-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=PHF1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A8B7CD13 | SEC12-like protein 1 isoform X1 OS=Phoenix dactylifera OX=42345 GN=LOC103712026 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology