Basic Information
Locus ID:
gene-LOC103711867
Species & Taxonomic ID:
Phoenix dactylifera & 42345
Genome Assembly:
GCF_009389715.1
Short Name:
ABCC5
Description:
ABC transporter C family member
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr17 | 10219703 | 10233823 | + | gene-LOC103711867 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.98 | 168,946.48 Da | 39.13 | 105.56 | 0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03250 | ABCC_MRP_domain1 | 624 | 824 | 7.22729E-103 | - |
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 311 | 598 | 2.8221E-110 | IPR044746 |
| CDD | cd03244 | ABCC_MRP_domain2 | 1267 | 1487 | 4.57324E-126 | - |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 950 | 1244 | 1.33161E-94 | IPR044726 |
| Pfam | PF00664 | ABC transporter transmembrane region | 312 | 578 | 1.4E-33 | IPR011527 |
| Pfam | PF00664 | ABC transporter transmembrane region | 954 | 1192 | 2.4E-29 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 1286 | 1434 | 1.0E-30 | IPR003439 |
| Pfam | PF00005 | ABC transporter | 643 | 776 | 3.0E-18 | IPR003439 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 620 | 845 | 5.53E-53 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1260 | 1498 | 5.92E-68 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 301 | 606 | 2.49E-39 | IPR036640 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 949 | 1252 | 6.93E-51 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 1253 | 1505 | 3.7E-83 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 618 | 852 | 9.1E-71 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 911 | 1249 | 1.8E-60 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 284 | 607 | 1.5E-56 | IPR036640 |
| SMART | SM00382 | AAA_5 | 1295 | 1480 | 1.4E-14 | IPR003593 |
| SMART | SM00382 | AAA_5 | 651 | 832 | 6.0E-12 | IPR003593 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 624 | 847 | 21.975569 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 310 | 590 | 39.446445 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1269 | 1503 | 17.693876 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 952 | 1222 | 35.449703 | IPR011527 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 749 | 763 | - | IPR017871 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 855 | 876 | - | - |
| Coils | Coil | Coil | 908 | 928 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G04120.1 | multidrug resistance-associated protein 5. encodes a high-affinity inositol hexakisphosphate transporter that plays a role in guard cell signaling and phytate storage. It is a member of MRP subfamily / ABC transporter subfamily C. | 0 |
| RefSeq | XP_008796397.1 | ABC transporter C family member 5 [Phoenix dactylifera] | 0 |
| Q7GB25 | ABC transporter C family member 5 OS=Arabidopsis thaliana OX=3702 GN=ABCC5 PE=2 SV=2 | 0 | |
| TrEMBL | A0A8B7CCR6 | ABC transporter C family member 5 OS=Phoenix dactylifera OX=42345 GN=LOC103711867 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology