Basic Information
Locus ID:
gene-LOC103711714
Species & Taxonomic ID:
Phoenix dactylifera & 42345
Genome Assembly:
GCF_009389715.1
Description:
The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr13 | 2561699 | 2571458 | - | gene-LOC103711714 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.26 | 48,339.13 Da | 53.86 | 91.27 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 230 | 277 | 9.86532E-13 | - |
| Pfam | PF12906 | RING-variant domain | 230 | 277 | 1.2E-9 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 226 | 281 | 5.05E-12 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 215 | 284 | 3.1E-14 | IPR013083 |
| SMART | SM00744 | ringv_2 | 229 | 278 | 2.5E-12 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 222 | 284 | 17.872038 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 10 | 24 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 25 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 149 | 168 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06330.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_008796189.1 | uncharacterized protein LOC103711714 [Phoenix dactylifera] | 0 |
| TrEMBL | A0A8B7CCC0 | uncharacterized protein LOC103711714 OS=Phoenix dactylifera OX=42345 GN=LOC103711714 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology