Basic Information
Locus ID:
gene-LOC103711617
Species & Taxonomic ID:
Phoenix dactylifera & 42345
Genome Assembly:
GCF_009389715.1
Description:
Modified RING finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold001654F | 52554 | 64424 | + | gene-LOC103711617 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.37 | 112,600.34 Da | 49.49 | 107.39 | -0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04564 | U-box domain | 278 | 343 | 3.0E-13 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 264 | 344 | 3.97E-18 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 481 | 972 | 1.07E-37 | IPR016024 |
| SUPERFAMILY | SSF48371 | ARM repeat | 208 | 570 | 2.73E-15 | IPR016024 |
| Gene3D | G3DSA:1.25.10.10 | - | 549 | 650 | 1.6E-10 | IPR011989 |
| Gene3D | G3DSA:1.25.10.10 | - | 653 | 869 | 6.6E-25 | IPR011989 |
| Gene3D | G3DSA:1.25.10.10 | - | 877 | 1012 | 4.8E-8 | IPR011989 |
| Gene3D | G3DSA:1.20.930.20 | - | 22 | 137 | 7.8E-8 | IPR036537 |
| Gene3D | G3DSA:1.25.10.10 | - | 353 | 548 | 3.5E-19 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 255 | 351 | 4.7E-20 | IPR013083 |
| SMART | SM00185 | arm_5 | 422 | 461 | 19.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 887 | 927 | 7.2 | IPR000225 |
| SMART | SM00185 | arm_5 | 379 | 420 | 9.1 | IPR000225 |
| SMART | SM00185 | arm_5 | 591 | 633 | 33.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 771 | 811 | 26.0 | IPR000225 |
| SMART | SM00504 | Ubox_2 | 278 | 341 | 3.1E-19 | IPR003613 |
| SMART | SM00185 | arm_5 | 551 | 590 | 27.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 685 | 726 | 300.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 814 | 854 | 0.98 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 274 | 348 | 21.08107 | IPR003613 |
| Coils | Coil | Coil | 76 | 103 | - | - |
| Coils | Coil | Coil | 207 | 253 | - | - |
| Coils | Coil | Coil | 141 | 168 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_038978585.1 | U-box domain-containing protein 44-like isoform X1 [Phoenix dactylifera] | 0 |
| C6L7U1 | Putative E3 ubiquitin-protein ligase LIN-1 OS=Lotus japonicus OX=34305 GN=CERBERUS PE=2 SV=2 | 0 | |
| TrEMBL | A0A8B8ZWB0 | RING-type E3 ubiquitin transferase OS=Phoenix dactylifera OX=42345 GN=LOC103711617 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg5773 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30235850 |
| Apiaceae | Apium graveolens | 1 | Ag5G02549 |
| Arecaceae | Cocos nucifera | 1 | COCNU_08G000790 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103711617 |
| Asteraceae | Flaveria trinervia | 1 | FtriNA05963 |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq07G0368 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl07G0379 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_3_RagTag.379 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-1544 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-2607 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-6116 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000019l.999 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00012874 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-6400 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-2184 |
| Salicaceae | Populus euphratica | 1 | populus_peu21467 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132609553 |
| Solanaceae | Solanum chilense | 1 | SOLCI003509000 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107031387 |