Basic Information
Locus ID:
gene-LOC103711491
Species & Taxonomic ID:
Phoenix dactylifera & 42345
Genome Assembly:
GCF_009389715.1
Description:
Topless-related protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 21800617 | 21826262 | + | gene-LOC103711491 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.12 | 122,774.41 Da | 44.65 | 89.22 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 453 | 486 | 0.19 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 915 | 947 | 0.014 | IPR001680 |
| Pfam | PF17814 | LisH-like dimerisation domain | 11 | 33 | 2.0E-5 | - |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 349 | 570 | 4.39E-28 | IPR036322 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 517 | 1040 | 2.28E-37 | IPR011047 |
| SUPERFAMILY | SSF50969 | YVTN repeat-like/Quinoprotein amine dehydrogenase | 977 | 1098 | 1.73E-5 | IPR011044 |
| Gene3D | G3DSA:2.130.10.10 | - | 809 | 1052 | 1.1E-26 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 575 | 680 | 2.0E-8 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 329 | 574 | 1.1E-27 | IPR015943 |
| SMART | SM00320 | WD40_4 | 401 | 440 | 53.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 339 | 378 | 0.31 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1000 | 1039 | 3.1 | IPR001680 |
| SMART | SM00320 | WD40_4 | 580 | 620 | 390.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 534 | 577 | 26.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 909 | 948 | 4.8E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 826 | 863 | 20.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 866 | 906 | 0.49 | IPR001680 |
| SMART | SM00668 | ctlh | 34 | 92 | 3.8E-9 | IPR006595 |
| SMART | SM00320 | WD40_4 | 490 | 531 | 0.11 | IPR001680 |
| SMART | SM00667 | Lish | 4 | 36 | 8.3E-4 | IPR006594 |
| SMART | SM00320 | WD40_4 | 446 | 487 | 0.14 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 453 | 496 | 9.739832 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 916 | 947 | 9.520146 | - |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 4 | 36 | 9.591893 | IPR006594 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 35 | 92 | 11.610362 | IPR006595 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 916 | 947 | 11.377324 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 474 | 488 | - | IPR019775 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G80490.1 | TOPLESS-related 1. | 0 |
| RefSeq | XP_017699380.1 | protein TOPLESS-like isoform X1 [Phoenix dactylifera] | 0 |
| Q0WV90 | Topless-related protein 1 OS=Arabidopsis thaliana OX=3702 GN=TPR1 PE=1 SV=3 | 0 | |
| TrEMBL | A0A8B7MUW9 | protein TOPLESS-like isoform X1 OS=Phoenix dactylifera OX=42345 GN=LOC103711491 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology