Basic Information
Locus ID:
gene-LOC103711273
Species & Taxonomic ID:
Phoenix dactylifera & 42345
Genome Assembly:
GCF_009389715.1
Description:
Receptor homology region, transmembrane domain- and RING domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold000167F | 604195 | 632693 | - | gene-LOC103711273 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.83 | 46,947.12 Da | 62.81 | 86.59 | 0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02123 | PA_C_RZF_like | 13 | 165 | 2.65535E-52 | IPR044744 |
| CDD | cd16486 | mRING-H2-C3H2C2D_ZSWM2 | 235 | 278 | 9.92103E-24 | - |
| Pfam | PF13639 | Ring finger domain | 235 | 278 | 3.1E-11 | IPR001841 |
| Pfam | PF02225 | PA domain | 83 | 144 | 9.0E-10 | IPR003137 |
| SUPERFAMILY | SSF52025 | PA domain | 83 | 150 | 4.32E-8 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 216 | 287 | 4.62E-19 | - |
| Gene3D | G3DSA:3.50.30.30 | - | 25 | 156 | 6.9E-27 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 196 | 283 | 3.9E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 236 | 277 | 2.9E-9 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 236 | 278 | 12.179465 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G71980.1 | Protease-associated (PA) RING/U-box zinc finger family protein. | 0 |
| RefSeq | XP_008795582.4 | receptor homology region, transmembrane domain- and RING domain-containing protein 1 [Phoenix dactylifera] | 0 |
| Q10R93 | Receptor homology region, transmembrane domain- and RING domain-containing protein 1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0167500 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8B7CB84 | receptor homology region, transmembrane domain- and RING domain-containing protein 1 OS=Phoenix dactylifera OX=42345 GN=LOC103711273 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology