Basic Information
Locus ID:
gene-LOC103711156
Species & Taxonomic ID:
Phoenix dactylifera & 42345
Genome Assembly:
GCF_009389715.1
Description:
E3 ubiquitin-protein ligase XBOS33
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 5766252 | 5777036 | - | gene-LOC103711156 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.14 | 55,514.97 Da | 52.64 | 84.41 | -0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00023 | Ankyrin repeat | 230 | 253 | 3.0E-4 | IPR002110 |
| Pfam | PF13637 | Ankyrin repeats (many copies) | 112 | 205 | 2.1E-9 | - |
| Pfam | PF13637 | Ankyrin repeats (many copies) | 46 | 98 | 1.3E-13 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 322 | 381 | 7.07E-8 | - |
| SUPERFAMILY | SSF48403 | Ankyrin repeat | 15 | 284 | 5.48E-48 | IPR036770 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 309 | 392 | 7.4E-8 | IPR013083 |
| Gene3D | G3DSA:1.25.40.20 | - | 160 | 276 | 1.6E-22 | IPR036770 |
| Gene3D | G3DSA:1.25.40.20 | - | 4 | 149 | 2.4E-30 | IPR036770 |
| SMART | SM00248 | ANK_2a | 184 | 213 | 6.6E-6 | IPR002110 |
| SMART | SM00248 | ANK_2a | 111 | 142 | 6.9 | IPR002110 |
| SMART | SM00248 | ANK_2a | 44 | 73 | 2.0E-4 | IPR002110 |
| SMART | SM00248 | ANK_2a | 227 | 259 | 0.003 | IPR002110 |
| SMART | SM00248 | ANK_2a | 77 | 106 | 0.012 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 77 | 109 | 10.4992 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 184 | 216 | 12.68942 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 44 | 76 | 13.73111 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 111 | 132 | 9.05686 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 111 | 132 | 9.038475 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 44 | 75 | 12.620211 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 227 | 253 | 9.27054 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 227 | 253 | 9.250726 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 77 | 108 | 9.409914 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 184 | 213 | 12.009989 | - |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 326 | 376 | 9.656702 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 341 | 350 | - | IPR017907 |
| PRINTS | PR01415 | Ankyrin repeat signature | 112 | 127 | 1.6E-5 | IPR002110 |
| PRINTS | PR01415 | Ankyrin repeat signature | 200 | 214 | 1.6E-5 | IPR002110 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 147 | 167 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 153 | 167 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G07270.1 | XB3 ortholog 3 in Arabidopsis thaliana. | 0 |
| RefSeq | XP_008795410.2 | probable E3 ubiquitin-protein ligase XBOS33 [Phoenix dactylifera] | 0 |
| Q337A0 | Probable E3 ubiquitin-protein ligase XBOS33 OS=Oryza sativa subsp. japonica OX=39947 GN=XBOS33 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8B7CB64 | probable E3 ubiquitin-protein ligase XBOS33 OS=Phoenix dactylifera OX=42345 GN=LOC103711156 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology