Basic Information
Locus ID:
gene-LOC103711123
Species & Taxonomic ID:
Phoenix dactylifera & 42345
Genome Assembly:
GCF_009389715.1
Description:
zinc finger CCCH domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 6189040 | 6204230 | - | gene-LOC103711123 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.18 | 46,090.88 Da | 28.08 | 76.72 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF18044 | CCCH-type zinc finger | 104 | 124 | 2.6E-7 | IPR041367 |
| Pfam | PF00400 | WD domain, G-beta repeat | 258 | 291 | 0.0065 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 134 | 170 | 1.0E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 296 | 330 | 0.0051 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 131 | 423 | 1.46E-45 | IPR036322 |
| SUPERFAMILY | SSF90229 | CCCH zinc finger | 101 | 125 | 4.58E-7 | IPR036855 |
| Gene3D | G3DSA:3.30.1370.210 | - | 9 | 64 | 1.5E-5 | - |
| Gene3D | G3DSA:2.30.30.1190 | - | 95 | 131 | 8.4E-7 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 132 | 215 | 2.0E-9 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 216 | 427 | 5.6E-32 | IPR015943 |
| SMART | SM00320 | WD40_4 | 210 | 247 | 20.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 294 | 331 | 7.1E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 254 | 291 | 0.0055 | IPR001680 |
| SMART | SM00320 | WD40_4 | 335 | 378 | 0.87 | IPR001680 |
| SMART | SM00320 | WD40_4 | 381 | 418 | 6.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 131 | 170 | 1.0E-5 | IPR001680 |
| SMART | SM00356 | c3hfinal6 | 30 | 53 | 0.12 | IPR000571 |
| SMART | SM00356 | c3hfinal6 | 102 | 126 | 4.5E-6 | IPR000571 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 100 | 127 | 14.28608 | IPR000571 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 138 | 170 | 10.970139 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 138 | 179 | 14.017362 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 261 | 300 | 11.477578 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 261 | 292 | 8.887423 | - |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 28 | 54 | 11.178288 | IPR000571 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 278 | 292 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 278 | 292 | 4.5E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 157 | 171 | 4.5E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 318 | 332 | 4.5E-7 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 24 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 73 | 94 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G25440.1 | zinc finger WD40 repeat protein 1. | 0 |
| RefSeq | XP_008795362.2 | LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein 17-like [Phoenix dactylifera] | 0 |
| Q0DYP5 | Zinc finger CCCH domain-containing protein 17 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0677700 PE=2 SV=2 | 0 | |
| TrEMBL | A0A8B7CAV5 | LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein 17-like OS=Phoenix dactylifera OX=42345 GN=LOC103711123 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology