Basic Information
Locus ID:
gene-LOC103711110
Species & Taxonomic ID:
Phoenix dactylifera & 42345
Genome Assembly:
GCF_009389715.1
Short Name:
CMPG1
Description:
U-box domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold000465F | 58449 | 60050 | - | gene-LOC103711110 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.04 | 48,921.40 Da | 45.27 | 98.39 | -0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 35 | 76 | 3.5265E-25 | - |
| Pfam | PF04564 | U-box domain | 31 | 102 | 7.4E-22 | IPR003613 |
| SUPERFAMILY | SSF48371 | ARM repeat | 182 | 424 | 1.19E-20 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 26 | 105 | 5.3E-30 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 120 | 424 | 7.3E-19 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 23 | 107 | 3.6E-30 | IPR013083 |
| SMART | SM00504 | Ubox_2 | 34 | 97 | 3.9E-33 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 30 | 104 | 42.814953 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G37490.1 | ARM repeat superfamily protein. | 0 |
| RefSeq | XP_008795339.1 | U-box domain-containing protein 21 [Phoenix dactylifera] | 0 |
| Q5PNY6 | U-box domain-containing protein 21 OS=Arabidopsis thaliana OX=3702 GN=PUB21 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8B9AF04 | RING-type E3 ubiquitin transferase OS=Phoenix dactylifera OX=42345 GN=LOC120111655 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology