Basic Information
Locus ID:
gene-LOC103710997
Species & Taxonomic ID:
Phoenix dactylifera & 42345
Genome Assembly:
GCF_009389715.1
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 714438 | 726212 | - | gene-LOC103710997 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.73 | 44,156.96 Da | 43.67 | 86.02 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 176 | 198 | 0.18 | IPR001680 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 65 | 373 | 6.28E-30 | IPR011047 |
| Gene3D | G3DSA:2.130.10.10 | - | 68 | 381 | 7.1E-60 | IPR015943 |
| SMART | SM00320 | WD40_4 | 333 | 374 | 0.57 | IPR001680 |
| SMART | SM00320 | WD40_4 | 202 | 241 | 1.7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 293 | 332 | 41.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 161 | 199 | 0.79 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 209 | 250 | 9.338814 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 34 | 71 | - | - |
| Coils | Coil | Coil | 30 | 51 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G50550.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_008795178.1 | SEC12-like protein 2 isoform X1 [Phoenix dactylifera] | 0 |
| Q39221 | SEC12-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=STL2P PE=1 SV=4 | 0 | |
| TrEMBL | A0A8B7CAG7 | SEC12-like protein 2 isoform X1 OS=Phoenix dactylifera OX=42345 GN=LOC103710997 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology