Basic Information
Locus ID:
gene-LOC103710795
Species & Taxonomic ID:
Phoenix dactylifera & 42345
Genome Assembly:
GCF_009389715.1
Description:
GATA transcription factor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 7976217 | 8013854 | - | gene-LOC103710795 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.64 | 198,280.91 Da | 51.69 | 82.11 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00202 | ZnF_GATA | 6 | 53 | 2.38807E-15 | IPR000679 |
| CDD | cd16652 | dRing_Rmd5p_like | 1134 | 1182 | 6.74555E-29 | IPR037683 |
| Pfam | PF03208 | PRA1 family protein | 675 | 812 | 2.7E-19 | IPR004895 |
| Pfam | PF13812 | Pentatricopeptide repeat domain | 1466 | 1508 | 5.1E-5 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 1642 | 1669 | 0.14 | IPR002885 |
| Pfam | PF13445 | RING-type zinc-finger | 1136 | 1177 | 3.8E-6 | IPR027370 |
| Pfam | PF01535 | PPR repeat | 1607 | 1631 | 0.66 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 1430 | 1458 | 9.8E-4 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 1536 | 1558 | 0.44 | IPR002885 |
| Pfam | PF10607 | CTLH/CRA C-terminal to LisH motif domain | 958 | 1098 | 3.7E-32 | IPR024964 |
| Pfam | PF13919 | Asx homology domain | 285 | 362 | 4.3E-8 | IPR028020 |
| Pfam | PF00320 | GATA zinc finger | 7 | 41 | 6.2E-12 | IPR000679 |
| SUPERFAMILY | SSF57850 | RING/U-box | 1130 | 1183 | 4.18E-6 | - |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 4 | 45 | 1.24E-9 | - |
| Gene3D | G3DSA:1.10.2020.20 | - | 288 | 376 | 1.8E-9 | IPR038108 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 1331 | 1491 | 7.3E-15 | IPR011990 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1127 | 1197 | 1.0E-5 | IPR013083 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 1492 | 1565 | 1.2E-7 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 1568 | 1761 | 1.3E-16 | IPR011990 |
| Gene3D | G3DSA:3.30.50.10 | - | 4 | 89 | 1.2E-12 | IPR013088 |
| SMART | SM00401 | GATA_3 | 1 | 53 | 2.5E-8 | IPR000679 |
| SMART | SM00668 | ctlh | 957 | 1014 | 4.3E-11 | IPR006595 |
| SMART | SM00757 | toby_final6 | 1010 | 1104 | 1.1E-26 | IPR013144 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 1641 | 1672 | 0.0032 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 1430 | 1459 | 6.6E-4 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 1427 | 1461 | 9.854266 | IPR002885 |
| ProSiteProfiles | PS50114 | GATA-type zinc finger domain profile. | 7 | 40 | 11.200135 | IPR000679 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 918 | 950 | 8.695028 | IPR006594 |
| ProSiteProfiles | PS51867 | Gid-type RING finger profile. | 1136 | 1179 | 13.974019 | IPR044063 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 957 | 1014 | 12.347672 | IPR006595 |
| ProSiteProfiles | PS51916 | DEUBAD (DEUBiquitinase ADaptor) domain profile. | 290 | 399 | 15.89715 | IPR044867 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 1638 | 1672 | 10.029647 | IPR002885 |
| ProSitePatterns | PS00344 | GATA-type zinc finger domain. | 7 | 32 | - | IPR000679 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 542 | 570 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 137 | 160 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 71 | 116 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 102 | 116 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 137 | 152 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G02150.1 | Tetratricopeptide repeat (TPR)-like superfamily protein. | 0 |
| RefSeq | XP_038971932.1 | uncharacterized protein LOC103710795 [Phoenix dactylifera] | 0 |
| Q8LPS6 | Pentatricopeptide repeat-containing protein At1g02150 OS=Arabidopsis thaliana OX=3702 GN=At1g02150 PE=2 SV=2 | 0 | |
| TrEMBL | A0A8B8ZF63 | uncharacterized protein LOC103710795 OS=Phoenix dactylifera OX=42345 GN=LOC103710795 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg4910, jg7540 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_14932 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah004113 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g105170 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg24260, Sbi_jg51725, Sbi_jg8091 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg11928 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00010825, GOSA_00010826 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl51156, Sgl56460 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000005581, gene:ENSEOMG00000021859 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.5AG0003820, CQ.Regalona.r1.5BG0004120 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30141900 |
| Apiaceae | Apium graveolens | 3 | Ag6G00727, Ag7G00180, Ag9G02756 |
| Arecaceae | Cocos nucifera | 2 | COCNU_07G004740, COCNU_10G003340 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103704605, gene-LOC103710795 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_10.637.V1.1, AsparagusV1_Unassigned.106.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri14G33824, Ftri7G21251 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT4G17570.2, AT5G47140.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10000871m.g.v1.0, Thhalv10024940m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp2g11950.v2.2, Sp7g16590.v2.2 |
| Brassicaceae | Brassica nigra | 5 | BniB02g063830.2N, BniB04g010380.2N, BniB04g015200.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G0702 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl03G0791, Cgl03G0801 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno14g05130 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate02g12590, gene.Thate08g17730 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-11342, nbisL1-mrna-1550 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG10.1127 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00004124 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb2G08587 |
| Poaceae | Echinochloa crus-galli | 6 | AH09.1402, AH09.1770, BH09.1589, BH09.1957, CH09.1709 ... |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_4AG0308660, gene-QOZ80_4BG0339640 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.2HG0185510.1, HORVU.MOREX.r3.2HG0217760.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_045307 |
| Poaceae | Oryza coarctata | 2 | Oco07G012070, Oco08G011760 |
| Poaceae | Oryza sativa | 1 | LOC_Os04g46020.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_06G176800, gene-BS78_09G245200 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0201647, Pt_Chr0301841 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr19G016550, Chr23G007450, Chr26G012310 |
| Poaceae | Thinopyrum elongatum | 5 | Tel2E01G1032100, Tel2E01G1034000, Tel2E01G1034300 ... |
| Poaceae | Triticum dicoccoides | 8 | gene_TRIDC2AG056640, gene_TRIDC2AG081510 ... |
| Poaceae | Triticum aestivum | 11 | TraesCS2A02G391700.1, TraesCS2A02G561200.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb075150_P002, Zm00001eb427850_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-37232, nbis-gene-5452 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g20163, Zma_g21725 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG04.3172, evm.TU.LG04.3173, evm.TU.LG16.428 ... |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc02g09370, gene.Posoc06g11030 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_14_RagTag.413, evm.TU.Scaffold_16_RagTag.386 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-17955, nbisL1-mrna-22645 |
| Rhizophoraceae | Ceriops tagal | 5 | nbisL1-mrna-11833, nbisL1-mrna-16863, nbisL1-mrna-17322 ... |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-20150, nbisL1-mrna-8314 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000007l.125, evm.TU.utg000022l.259 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00014419, Maker00018404 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-16179, nbisL1-mrna-3400 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-10678, nbisL1-mrna-6490 |
| Salicaceae | Populus euphratica | 2 | populus_peu03065, populus_peu33943 |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132609771, gene-LOC132635177, gene-LOC132640846 |
| Solanaceae | Solanum chilense | 3 | SOLCI001682700, SOLCI004741300, SOLCI007288400 |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107023215, gene-LOC107028969, gene-LOC107029107 |
| Tamaricaceae | Reaumuria soongarica | 2 | gene_14893, gene_16164 |
| Tamaricaceae | Tamarix chinensis | 2 | TC01G2778, TC09G0431 |