Basic Information
Locus ID:
gene-LOC103710761
Species & Taxonomic ID:
Phoenix dactylifera & 42345
Genome Assembly:
GCF_009389715.1
Description:
Vacuolar protein sorting-associated protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 7349164 | 7432163 | + | gene-LOC103710761 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.85 | 489,312.16 Da | 42.45 | 90.47 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 2231 | 2378 | 4.9E-12 | IPR009291 |
| Pfam | PF16908 | Vacuolar sorting-associated protein 13, N-terminal | 133 | 374 | 3.4E-64 | IPR031646 |
| Pfam | PF00169 | PH domain | 800 | 908 | 3.5E-8 | IPR001849 |
| Pfam | PF06398 | Integral peroxisomal membrane peroxin | 2869 | 2985 | 1.8E-7 | IPR010482 |
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 2001 | 2161 | 1.7E-12 | IPR009291 |
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 4235 | 4311 | 3.8E-8 | IPR009291 |
| Pfam | PF16910 | Repeating coiled region of VPS13 | 558 | 778 | 1.8E-29 | IPR031642 |
| Pfam | PF06650 | SHR-binding domain of vacuolar-sorting associated protein 13 | 3343 | 3508 | 1.4E-8 | IPR009543 |
| Pfam | PF12624 | N-terminal region of Chorein or VPS13 | 2 | 102 | 2.5E-28 | IPR026854 |
| SUPERFAMILY | SSF50729 | PH domain-like | 795 | 911 | 1.48E-10 | - |
| Gene3D | G3DSA:2.30.29.30 | - | 795 | 912 | 4.8E-7 | IPR011993 |
| SMART | SM00233 | PH_update | 798 | 911 | 6.3E-8 | IPR001849 |
| ProSiteProfiles | PS50003 | PH domain profile. | 797 | 909 | 9.1701 | IPR001849 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 4342 | 4361 | - | - |
| Coils | Coil | Coil | 111 | 131 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G17140.3 | pleckstrin homology (PH) domain-containing protein. | 0 |
| RefSeq | XP_017699200.2 | uncharacterized protein LOC103710761 isoform X1 [Phoenix dactylifera] | 0 |
| G0S3B8 | Intermembrane lipid transfer protein VPS13 OS=Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719) OX=759272 GN=VPS13 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8B7MUK2 | uncharacterized protein LOC103710761 isoform X1 OS=Phoenix dactylifera OX=42345 GN=LOC103710761 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology