Basic Information
Locus ID:
gene-LOC103710645
Species & Taxonomic ID:
Phoenix dactylifera & 42345
Genome Assembly:
GCF_009389715.1
Description:
High mobility group B protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 13680471 | 13688779 | + | gene-LOC103710645 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.69 | 36,876.65 Da | 59.80 | 68.15 | -0.50 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16872 | ARID_HMGB9-like | 43 | 128 | 4.09463E-47 | - |
| CDD | cd01390 | HMGB-UBF_HMG-box | 262 | 320 | 2.8732E-6 | - |
| Pfam | PF01388 | ARID/BRIGHT DNA binding domain | 45 | 128 | 1.8E-17 | IPR001606 |
| SUPERFAMILY | SSF47095 | HMG-box | 261 | 319 | 8.51E-8 | IPR036910 |
| SUPERFAMILY | SSF46774 | ARID-like | 33 | 140 | 4.84E-29 | IPR036431 |
| Gene3D | G3DSA:1.10.150.60 | - | 31 | 143 | 6.2E-28 | IPR036431 |
| Gene3D | G3DSA:1.10.30.10 | High mobility group box domain | 261 | 325 | 3.1E-6 | IPR036910 |
| SMART | SM01014 | ARID_2 | 38 | 128 | 1.4E-27 | - |
| SMART | SM00501 | bright_3 | 42 | 133 | 1.6E-29 | IPR001606 |
| ProSiteProfiles | PS51011 | ARID domain profile. | 41 | 132 | 25.975788 | IPR001606 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 25 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 172 | 199 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 172 | 189 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 7 | 21 | - | - |
| Coils | Coil | Coil | 302 | 322 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13350.1 | HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain. | 0 |
| RefSeq | XP_008794686.2 | high mobility group B protein 15-like [Phoenix dactylifera] | 0 |
| Q9LTT3 | High mobility group B protein 10 OS=Arabidopsis thaliana OX=3702 GN=HMGB10 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8B7C9M1 | high mobility group B protein 15-like OS=Phoenix dactylifera OX=42345 GN=LOC103710645 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology