Basic Information
Locus ID:
gene-LOC103710574
Species & Taxonomic ID:
Phoenix dactylifera & 42345
Genome Assembly:
GCF_009389715.1
Description:
Cupin
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 1982173 | 1984622 | - | gene-LOC103710574 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.59 | 38,648.67 Da | 25.90 | 86.25 | -0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02242 | cupin_11S_legumin_N | 4 | 174 | 8.551E-66 | - |
| CDD | cd02243 | cupin_11S_legumin_C | 199 | 354 | 4.83148E-80 | - |
| Pfam | PF00190 | Cupin | 200 | 337 | 3.1E-22 | IPR006045 |
| Pfam | PF00190 | Cupin | 11 | 157 | 2.0E-29 | IPR006045 |
| SUPERFAMILY | SSF51182 | RmlC-like cupins | 15 | 345 | 1.33E-45 | IPR011051 |
| Gene3D | G3DSA:2.60.120.10 | Jelly Rolls | 9 | 178 | 1.1E-32 | IPR014710 |
| Gene3D | G3DSA:2.60.120.10 | Jelly Rolls | 194 | 357 | 9.1E-49 | IPR014710 |
| SMART | SM00835 | Cupin_1_3 | 3 | 158 | 2.6E-35 | IPR006045 |
| SMART | SM00835 | Cupin_1_3 | 196 | 340 | 1.5E-15 | IPR006045 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 295 | 313 | 4.8E-15 | IPR006044 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 212 | 232 | 4.8E-15 | IPR006044 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 259 | 275 | 4.8E-15 | IPR006044 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 277 | 292 | 4.8E-15 | IPR006044 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 317 | 334 | 4.8E-15 | IPR006044 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G28680.1 | RmlC-like cupins superfamily protein. | 0 |
| RefSeq | XP_008794577.1 | glutelin type-D 1-like [Phoenix dactylifera] | 0 |
| P07728 | Glutelin type-A 1 OS=Oryza sativa subsp. japonica OX=39947 GN=GLUA1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A8B7C9G8 | glutelin type-D 1-like OS=Phoenix dactylifera OX=42345 GN=LOC103710574 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology