Basic Information
Locus ID:
gene-LOC103710468
Species & Taxonomic ID:
Phoenix dactylifera & 42345
Genome Assembly:
GCF_009389715.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 1757439 | 1767890 | + | gene-LOC103710468 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.51 | 55,421.23 Da | 48.58 | 88.09 | 0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13637 | Ankyrin repeats (many copies) | 65 | 117 | 7.5E-11 | - |
| Pfam | PF00023 | Ankyrin repeat | 131 | 151 | 0.0078 | IPR002110 |
| Pfam | PF13637 | Ankyrin repeats (many copies) | 196 | 258 | 5.2E-7 | - |
| SUPERFAMILY | SSF48403 | Ankyrin repeat | 33 | 290 | 1.35E-51 | IPR036770 |
| SUPERFAMILY | SSF57850 | RING/U-box | 334 | 391 | 6.67E-6 | - |
| Gene3D | G3DSA:1.25.40.20 | - | 172 | 303 | 3.8E-25 | IPR036770 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 319 | 399 | 1.1E-5 | IPR013083 |
| Gene3D | G3DSA:1.25.40.20 | - | 26 | 160 | 8.2E-33 | IPR036770 |
| SMART | SM00248 | ANK_2a | 193 | 222 | 2.5E-5 | IPR002110 |
| SMART | SM00248 | ANK_2a | 130 | 160 | 0.19 | IPR002110 |
| SMART | SM00248 | ANK_2a | 63 | 92 | 4.0E-5 | IPR002110 |
| SMART | SM00184 | ring_2 | 335 | 384 | 0.0074 | IPR001841 |
| SMART | SM00248 | ANK_2a | 237 | 266 | 1.9E-4 | IPR002110 |
| SMART | SM00248 | ANK_2a | 96 | 125 | 0.0024 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 130 | 151 | 9.64448 | IPR002110 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 335 | 385 | 9.582937 | IPR001841 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 130 | 151 | 9.622166 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 237 | 268 | 10.763014 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 63 | 95 | 13.11678 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 96 | 128 | 11.08682 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 96 | 127 | 9.993605 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 63 | 94 | 12.142647 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 193 | 225 | 12.68942 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 193 | 221 | 12.169178 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 237 | 269 | 11.96825 | IPR002110 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 350 | 359 | - | IPR017907 |
| PRINTS | PR01415 | Ankyrin repeat signature | 194 | 209 | 9.3E-5 | IPR002110 |
| PRINTS | PR01415 | Ankyrin repeat signature | 253 | 267 | 9.3E-5 | IPR002110 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G57740.1 | XB3 ortholog 2 in Arabidopsis thaliana. ubiquitin ligase | 0 |
| RefSeq | XP_008794403.2 | probable E3 ubiquitin-protein ligase XBOS32 isoform X1 [Phoenix dactylifera] | 0 |
| Q6KAE5 | Probable E3 ubiquitin-protein ligase XBOS32 OS=Oryza sativa subsp. japonica OX=39947 GN=XBOS32 PE=2 SV=2 | 0 | |
| TrEMBL | A0A8B7C9B0 | probable E3 ubiquitin-protein ligase XBOS32 isoform X1 OS=Phoenix dactylifera OX=42345 GN=LOC103710468 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology