Basic Information
Locus ID:
gene-LOC103710457
Species & Taxonomic ID:
Phoenix dactylifera & 42345
Genome Assembly:
GCF_009389715.1
Description:
DNA repair protein RAD23-1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 1944342 | 1963348 | + | gene-LOC103710457 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.67 | 40,165.31 Da | 52.65 | 77.89 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01805 | Ubl_Rad23 | 1 | 74 | 9.7881E-29 | - |
| Pfam | PF00627 | UBA/TS-N domain | 332 | 367 | 7.3E-12 | IPR015940 |
| Pfam | PF00627 | UBA/TS-N domain | 148 | 183 | 1.5E-13 | IPR015940 |
| Pfam | PF09280 | XPC-binding domain | 251 | 306 | 1.3E-21 | IPR015360 |
| Pfam | PF00240 | Ubiquitin family | 3 | 76 | 5.7E-16 | IPR000626 |
| SUPERFAMILY | SSF46934 | UBA-like | 142 | 193 | 1.33E-11 | IPR009060 |
| SUPERFAMILY | SSF101238 | XPC-binding domain | 247 | 314 | 9.81E-22 | IPR036353 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 88 | 9.67E-21 | IPR029071 |
| SUPERFAMILY | SSF46934 | UBA-like | 314 | 373 | 1.13E-14 | IPR009060 |
| Gene3D | G3DSA:1.10.8.10 | - | 138 | 189 | 5.8E-20 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 323 | 371 | 2.1E-22 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 80 | 1.3E-24 | - |
| Gene3D | G3DSA:1.10.10.540 | - | 242 | 307 | 1.3E-26 | IPR036353 |
| SMART | SM00165 | uba_6 | 332 | 369 | 2.5E-8 | IPR015940 |
| SMART | SM00165 | uba_6 | 145 | 185 | 0.0094 | IPR015940 |
| SMART | SM00213 | ubq_7 | 1 | 75 | 8.2E-20 | IPR000626 |
| SMART | SM00727 | CBM | 247 | 292 | 2.0E-4 | IPR006636 |
| TIGRFAM | TIGR00601 | rad23: UV excision repair protein Rad23 | 1 | 375 | 2.0E-124 | IPR004806 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 79 | 17.669947 | IPR000626 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 330 | 370 | 14.956604 | IPR015940 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 142 | 186 | 12.474603 | IPR015940 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 277 | 299 | 1.1E-29 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 358 | 373 | 1.1E-29 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 326 | 342 | 1.1E-29 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 343 | 357 | 1.1E-29 | IPR004806 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 93 | 107 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 81 | 127 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 108 | 127 | - | - |
| Coils | Coil | Coil | 278 | 298 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G79650.2 | Rad23 UV excision repair protein family. Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome. | 0 |
| RefSeq | XP_008794386.2 | ubiquitin receptor RAD23b-like [Phoenix dactylifera] | 0 |
| Q84L33 | Ubiquitin receptor RAD23b OS=Arabidopsis thaliana OX=3702 GN=RAD23B PE=1 SV=3 | 0 | |
| TrEMBL | A0A8B7C968 | Ubiquitin receptor RAD23 OS=Phoenix dactylifera OX=42345 GN=LOC103710457 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology