HalophFGD

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Basic Information
Locus ID: gene-LOC103709993
Species & Taxonomic ID: Phoenix dactylifera & 42345
Genome Assembly: GCF_009389715.1
Description: F-box protein
Maps and Mapping Data
Chromosome Start End Strand ID
chr4 23336084 23338037 - gene-LOC103709993
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
5.87 33,662.03 Da 43.50 89.70 -0.09
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
Pfam PF07734 F-box associated 135 251 7.9E-10 IPR006527
SUPERFAMILY SSF50965 Galactose oxidase, central domain 36 265 9.42E-8 IPR011043
TIGRFAM TIGR01640 F_box_assoc_1: F-box protein interaction domain 34 239 4.8E-33 IPR017451
Best hit
Source Best Hit ID Description E-value
TAIR AT1G53550.1 F-box family protein. 0
RefSeq XP_038981828.1 F-box protein CPR1-like [Phoenix dactylifera] 0
TrEMBL A0A8B9AD17 F-box protein CPR1-like OS=Phoenix dactylifera OX=42345 GN=LOC103709993 PE=4 SV=1 0
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network
🔍 Protein-Protein Interaction Network
Orthology
Family Species Count Orthologous Genes
Arecaceae Phoenix dactylifera 1 gene-LOC103709993
Asparagaceae Asparagus officinalis 1 AsparagusV1_06.187.V1.1
Poaceae Echinochloa crus-galli 24 AH02.2990, AH07.122, AH07.134, AH09.801, BH01.2596, BH07.313 ...
BH05.3914, BH05.3915, BH06.2751, BH07.2057, BH07.71, BH09.200, CH01.2792, CH02.1075, CH03.4547, CH03.4708, CH03.4731, CH03.4734, CH03.4757, CH03.4758, CH04.1894, CH05.2057, CH05.4128, CH05.4444
Poaceae Eleusine coracana subsp. coracana 13 gene-QOZ80_1BG0057680, gene-QOZ80_2AG0105300 ...
gene-QOZ80_2BG0152490, gene-QOZ80_3BG0286140, gene-QOZ80_3BG0297760, gene-QOZ80_4AG0320530, gene-QOZ80_4AG0320550, gene-QOZ80_4AG0322110, gene-QOZ80_4AG0322130, gene-QOZ80_4BG0348890, gene-QOZ80_4BG0351940, gene-QOZ80_4BG0351950, gene-QOZ80_6AG0536790
Poaceae Hordeum vulgare 11 HORVU.MOREX.r3.2HG0122350.1.CDS1 ...
HORVU.MOREX.r3.2HG0132050.1.CDS1, HORVU.MOREX.r3.2HG0168030.1.CDS1, HORVU.MOREX.r3.2HG0168040.1.CDS1, HORVU.MOREX.r3.2HG0194150.1.CDS1, HORVU.MOREX.r3.2HG0194780.1.CDS1, HORVU.MOREX.r3.3HG0221170.1.CDS1, HORVU.MOREX.r3.5HG0530150.1.CDS1, HORVU.MOREX.r3.6HG0543810.1.CDS1, HORVU.MOREX.r3.7HG0637410.1.CDS1, HORVU.MOREX.r3.7HG0637430.1.CDS1
Poaceae Lolium multiflorum 28 gene-QYE76_006812, gene-QYE76_018860, gene-QYE76_025880 ...
gene-QYE76_026959, gene-QYE76_026965, gene-QYE76_036377, gene-QYE76_036382, gene-QYE76_037512, gene-QYE76_038561, gene-QYE76_039703, gene-QYE76_039705, gene-QYE76_043546, gene-QYE76_044498, gene-QYE76_048448, gene-QYE76_049122, gene-QYE76_049815, gene-QYE76_052134, gene-QYE76_057658, gene-QYE76_057659, gene-QYE76_057662, gene-QYE76_057663, gene-QYE76_057664, gene-QYE76_058817, gene-QYE76_058828, gene-QYE76_060553, gene-QYE76_061038, gene-QYE76_066315, gene-QYE76_071663
Poaceae Oryza coarctata 12 Oco01G010480, Oco01G023330, Oco02G015220, Oco03G010080 ...
Oco05G014210, Oco07G003900, Oco07G003910, Oco07G004650, Oco12G003190, Oco12G003280, Oco18G006330, Oco23G002440
Poaceae Oryza sativa 18 LOC_Os01g45020.2, LOC_Os02g15680.1, LOC_Os02g27400.1 ...
LOC_Os02g51580.1, LOC_Os03g25080.1, LOC_Os04g31530.1, LOC_Os04g31540.1, LOC_Os04g31570.1, LOC_Os06g07380.1, LOC_Os06g07450.1, LOC_Os06g07460.1, LOC_Os06g19670.1, LOC_Os08g29400.1, LOC_Os09g27520.1, LOC_Os09g27570.1, LOC_Os09g27660.3, LOC_Os10g24870.1, LOC_Os12g38090.1
Poaceae Paspalum vaginatum 8 gene-BS78_03G214100, gene-BS78_03G214200 ...
gene-BS78_04G106800, gene-BS78_06G017700, gene-BS78_06G065900, gene-BS78_09G211600, gene-BS78_10G223700, gene-BS78_10G275800
Poaceae Puccinellia tenuiflora 23 Pt_Chr0100567, Pt_Chr0100612, Pt_Chr0101012, Pt_Chr0204969 ...
Pt_Chr0204971, Pt_Chr0206814, Pt_Chr0305310, Pt_Chr0305585, Pt_Chr0305651, Pt_Chr0305654, Pt_Chr0401364, Pt_Chr0500386, Pt_Chr0500513, Pt_Chr0500567, Pt_Chr0501495, Pt_Chr0501772, Pt_Chr0501783, Pt_Chr0603263, Pt_Chr0605307, Pt_Chr0605309, Pt_Chr0703331, Pt_Chr0703332, Pt_Ctg00334
Poaceae Sporobolus alterniflorus 10 Chr06G014710, Chr15G016750, Chr15G024360, Chr19G008640 ...
Chr20G006730, Chr23G015000, Chr26G004820, Chr27G007850, Chr27G007860, Chr29G006440
Poaceae Thinopyrum elongatum 11 Tel2E01G205100, Tel2E01G562900, Tel2E01G764100 ...
Tel2E01G788800, Tel3E01G082500, Tel3E01G810100, Tel5E01G799100, Tel6E01G117000, Tel6E01G363400, Tel7E01G056400, Telscf40501G000100
Poaceae Triticum dicoccoides 6 gene_TRIDC1BG061400, gene_TRIDC3AG074610 ...
gene_TRIDC3BG030670, gene_TRIDC3BG030700, gene_TRIDC6BG030800, gene_TRIDC7AG078480
Poaceae Triticum aestivum 43 TraesCS2A02G341300.1.cds1, TraesCS2B02G104500.1.cds1 ...
TraesCS2B02G151400.1.cds1, TraesCS2B02G196900.1, TraesCS2B02G339000.1, TraesCS2B02G490300.1.cds1, TraesCS2D02G093200.1.cds1, TraesCS2D02G131500.1.cds1, TraesCS2D02G318900.1.cds1, TraesCS2D02G441600.1.cds1, TraesCS2D02G441700.1.cds1, TraesCS2D02G449800.1, TraesCS3A02G001000.1.cds1, TraesCS3A02G037400.1.cds1, TraesCS3A02G526900.1.cds1, TraesCS3B02G002100.1.cds1, TraesCS3B02G046300.1.cds1, TraesCS3B02G046400.1.cds1, TraesCS3B02G178900.1, TraesCS3B02G179000.1.cds1, TraesCS3B02G210700.1, TraesCS3B02G210800.1, TraesCS3D02G042200.1.cds1, TraesCS3D02G532600.1.cds1, TraesCS4A02G356900.1, TraesCS4A02G461900.1.cds1, TraesCS4B02G001400.1.cds1, TraesCS4B02G060900.1.cds1, TraesCS4B02G061700.1.cds1, TraesCS5A02G197600.1.cds1, TraesCS5A02G200300.1, TraesCS5B02G198900.1.cds1, TraesCS5B02G515700.1.cds1, TraesCS5D02G030900.1.cds1, TraesCS6B02G201900.1, TraesCS6B02G202100.1, TraesCS7A02G027600.1.cds1, TraesCS7A02G569200.1.cds1, TraesCS7B02G489400.1.cds1, TraesCS7D02G009500.1.cds1, TraesCSU02G055600.1.cds1, TraesCSU02G184600.1.cds1, TraesCSU02G184700.1.cds1
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