Basic Information
Locus ID:
gene-LOC103709601
Species & Taxonomic ID:
Phoenix dactylifera & 42345
Genome Assembly:
GCF_009389715.1
Description:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 21082460 | 21089449 | + | gene-LOC103709601 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.93 | 25,431.17 Da | 48.45 | 67.18 | -0.60 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12420 | RRM_RBPMS_like | 130 | 212 | 4.72963E-31 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 132 | 203 | 3.8E-12 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 125 | 233 | 4.7E-13 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 124 | 216 | 9.7E-20 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 131 | 204 | 0.0022 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 130 | 216 | 11.485845 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 53 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 29 | 48 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G76940.2 | RNA-binding (RRM/RBD/RNP motifs) family protein. | 0 |
| RefSeq | XP_038986364.1 | nuclear speckle RNA-binding protein A-like [Phoenix dactylifera] | 0 |
| A1A6K6 | Nuclear speckle RNA-binding protein A OS=Arabidopsis thaliana OX=3702 GN=NSRA PE=2 SV=1 | 0 | |
| TrEMBL | A0A8B9ASP0 | nuclear speckle RNA-binding protein A-like OS=Phoenix dactylifera OX=42345 GN=LOC103709601 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology