Basic Information
Locus ID:
gene-LOC103709577
Species & Taxonomic ID:
Phoenix dactylifera & 42345
Genome Assembly:
GCF_009389715.1
Description:
Belongs to the DEAD box helicase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 20716220 | 20724639 | - | gene-LOC103709577 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.40 | 47,072.27 Da | 44.91 | 91.50 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18787 | SF2_C_DEAD | 253 | 383 | 4.18779E-61 | - |
| CDD | cd17939 | DEADc_EIF4A | 45 | 242 | 3.71619E-135 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 266 | 374 | 6.8E-29 | IPR001650 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 65 | 226 | 6.8E-40 | IPR011545 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 109 | 394 | 3.9E-74 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 249 | 413 | 2.4E-58 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 30 | 248 | 1.4E-66 | IPR027417 |
| SMART | SM00490 | helicmild6 | 293 | 374 | 1.5E-31 | IPR001650 |
| SMART | SM00487 | ultradead3 | 59 | 256 | 6.5E-57 | IPR014001 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 71 | 241 | 29.107212 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 252 | 413 | 26.084492 | IPR001650 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 40 | 68 | 10.401074 | IPR014014 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 187 | 195 | - | IPR000629 |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13920.1 | eukaryotic translation initiation factor 4A1. eukaryotic translation initiation factor 4A-1 | 0 |
| RefSeq | XP_008793233.1 | eukaryotic initiation factor 4A-15-like [Phoenix dactylifera] | 0 |
| Q40468 | Eukaryotic initiation factor 4A-15 OS=Nicotiana tabacum OX=4097 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8B7C7F1 | eukaryotic initiation factor 4A-15-like OS=Phoenix dactylifera OX=42345 GN=LOC103709577 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology