Basic Information
Locus ID:
gene-LOC103709512
Species & Taxonomic ID:
Phoenix dactylifera & 42345
Genome Assembly:
GCF_009389715.1
Description:
Receptor protein kinase CLAVATA1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 12533423 | 12539516 | - | gene-LOC103709512 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.42 | 109,095.51 Da | 33.64 | 101.16 | -0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13855 | Leucine rich repeat | 271 | 330 | 9.9E-8 | IPR001611 |
| Pfam | PF00069 | Protein kinase domain | 708 | 974 | 1.9E-44 | IPR000719 |
| Pfam | PF00560 | Leucine Rich Repeat | 247 | 269 | 0.9 | IPR001611 |
| Pfam | PF00560 | Leucine Rich Repeat | 367 | 387 | 1.4 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 173 | 230 | 1.5E-6 | IPR001611 |
| Pfam | PF00560 | Leucine Rich Repeat | 127 | 146 | 1.7 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 34 | 73 | 2.9E-6 | IPR013210 |
| SUPERFAMILY | SSF52047 | RNI-like | 82 | 403 | 4.08E-66 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 310 | 605 | 7.14E-50 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 700 | 980 | 4.86E-74 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 782 | 987 | 5.9E-60 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 272 | 341 | 6.6E-19 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 667 | 781 | 5.2E-23 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 349 | 631 | 8.5E-80 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 32 | 194 | 3.6E-41 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 195 | 271 | 1.6E-19 | IPR032675 |
| SMART | SM00369 | LRR_typ_2 | 510 | 534 | 290.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 172 | 195 | 100.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 341 | 365 | 17.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 196 | 220 | 160.0 | IPR003591 |
| SMART | SM00220 | serkin_6 | 704 | 976 | 2.0E-32 | IPR000719 |
| SMART | SM00369 | LRR_typ_2 | 366 | 388 | 69.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 293 | 316 | 20.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 124 | 156 | 370.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 245 | 269 | 56.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 558 | 582 | 260.0 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 704 | 984 | 37.007771 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 826 | 838 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G20270.1 | Leucine-rich receptor-like protein kinase family protein. Encodes a CLAVATA1-related receptor kinase-like protein required for both shoot and flower meristem function. It has a broad expression pattern and is involved in vascular strand development in the leaf, control of leaf shape, size and symmetry, male gametophyte development and ovule specification and function. | 0 |
| RefSeq | XP_026661387.2 | leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 isoform X1 [Phoenix dactylifera] | 0 |
| O65440 | Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 OS=Arabidopsis thaliana OX=3702 GN=BAM3 PE=1 SV=3 | 0 | |
| TrEMBL | A0A8B8J5Y9 | leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 isoform X1 OS=Phoenix dactylifera OX=42345 GN=LOC103709512 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology