Basic Information
Locus ID:
gene-LOC103709371
Species & Taxonomic ID:
Phoenix dactylifera & 42345
Genome Assembly:
GCF_009389715.1
Description:
Belongs to the helicase family. RecQ subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 29219526 | 29238687 | - | gene-LOC103709371 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.62 | 85,826.76 Da | 49.35 | 81.09 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17920 | DEXHc_RecQ | 51 | 251 | 2.4329E-106 | - |
| CDD | cd18794 | SF2_C_RecQ | 252 | 385 | 6.64148E-62 | - |
| Pfam | PF00270 | DEAD/DEAH box helicase | 66 | 231 | 5.5E-19 | IPR011545 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 273 | 374 | 3.4E-14 | IPR001650 |
| Pfam | PF16124 | RecQ zinc-binding | 388 | 460 | 9.6E-12 | IPR032284 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 101 | 397 | 2.13E-52 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 26 | 251 | 2.5E-88 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 252 | 478 | 1.1E-63 | IPR027417 |
| SMART | SM00487 | ultradead3 | 58 | 260 | 2.4E-31 | IPR014001 |
| SMART | SM00490 | helicmild6 | 295 | 376 | 2.8E-22 | IPR001650 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 52 | 463 | 5.2E-144 | IPR004589 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 70 | 244 | 22.838675 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 271 | 420 | 17.579678 | IPR001650 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 734 | 771 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 21 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 734 | 765 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G35740.1 | DEAD/DEAH box RNA helicase family protein . Encodes RECQ3, an ATP-dependent helicase. | 0 |
| RefSeq | XP_038985394.1 | ATP-dependent DNA helicase Q-like 3 isoform X1 [Phoenix dactylifera] | 0 |
| Q9FT72 | ATP-dependent DNA helicase Q-like 3 OS=Arabidopsis thaliana OX=3702 GN=RECQL3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8B9APZ7 | ATP-dependent DNA helicase OS=Phoenix dactylifera OX=42345 GN=LOC103709371 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology