Basic Information
Locus ID:
gene-LOC103709291
Species & Taxonomic ID:
Phoenix dactylifera & 42345
Genome Assembly:
GCF_009389715.1
Description:
ATP-dependent RNA
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 14933677 | 14951325 | + | gene-LOC103709291 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.56 | 93,442.01 Da | 64.03 | 63.21 | -0.82 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00201 | WW | 22 | 52 | 1.39218E-5 | IPR001202 |
| CDD | cd18787 | SF2_C_DEAD | 388 | 517 | 1.24425E-62 | - |
| Pfam | PF00397 | WW domain | 21 | 51 | 2.1E-8 | IPR001202 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 399 | 508 | 6.2E-33 | IPR001650 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 193 | 363 | 3.8E-49 | IPR011545 |
| SUPERFAMILY | SSF51045 | WW domain | 16 | 54 | 3.71E-9 | IPR036020 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 241 | 524 | 1.47E-75 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 145 | 380 | 1.6E-87 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 381 | 550 | 3.4E-58 | IPR027417 |
| Gene3D | G3DSA:2.20.70.10 | - | 21 | 52 | 4.6E-6 | - |
| SMART | SM00456 | ww_5 | 20 | 53 | 5.3E-7 | IPR001202 |
| SMART | SM00490 | helicmild6 | 428 | 508 | 4.3E-34 | IPR001650 |
| SMART | SM00487 | ultradead3 | 188 | 391 | 1.2E-63 | IPR014001 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 200 | 374 | 31.26379 | IPR014001 |
| ProSiteProfiles | PS50020 | WW/rsp5/WWP domain profile. | 19 | 53 | 11.7233 | IPR001202 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 403 | 547 | 25.218079 | IPR001650 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 169 | 197 | 11.360547 | IPR014014 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 320 | 328 | - | IPR000629 |
| ProSitePatterns | PS01159 | WW/rsp5/WWP domain signature. | 25 | 51 | - | IPR001202 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 552 | 847 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 85 | 102 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 48 | 123 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 25 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 830 | 847 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 598 | 630 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 106 | 121 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 689 | 703 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 52 | 73 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 752 | 782 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 641 | 657 | - | - |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G01540.1 | DEAD box RNA helicase 1. RNA HELICASE DRH1 | 0 |
| RefSeq | XP_008792789.2 | ATP-dependent RNA helicase-like protein DB10 isoform X1 [Phoenix dactylifera] | 0 |
| Q8H136 | DEAD-box ATP-dependent RNA helicase 14 OS=Arabidopsis thaliana OX=3702 GN=RH14 PE=1 SV=2 | 0 | |
| TrEMBL | A0A8B8J5V6 | ATP-dependent RNA helicase-like protein DB10 isoform X1 OS=Phoenix dactylifera OX=42345 GN=LOC103709291 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology