Basic Information
Locus ID:
gene-LOC103708769
Species & Taxonomic ID:
Phoenix dactylifera & 42345
Genome Assembly:
GCF_009389715.1
Description:
ABC transporter C family member
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 4460087 | 4479814 | - | gene-LOC103708769 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.20 | 170,396.70 Da | 39.12 | 103.51 | 0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03250 | ABCC_MRP_domain1 | 649 | 849 | 2.92244E-114 | - |
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 336 | 623 | 3.17714E-97 | IPR044746 |
| CDD | cd03244 | ABCC_MRP_domain2 | 1277 | 1497 | 7.1382E-121 | - |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 960 | 1254 | 6.88944E-92 | IPR044726 |
| Pfam | PF00005 | ABC transporter | 1297 | 1444 | 1.2E-28 | IPR003439 |
| Pfam | PF00005 | ABC transporter | 667 | 801 | 6.0E-21 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 964 | 1204 | 1.2E-32 | IPR011527 |
| Pfam | PF00664 | ABC transporter transmembrane region | 336 | 602 | 9.0E-24 | IPR011527 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1271 | 1512 | 3.04E-66 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 329 | 630 | 3.79E-29 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 646 | 871 | 1.2E-56 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 962 | 1260 | 2.49E-54 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 634 | 889 | 2.5E-77 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 318 | 631 | 4.6E-46 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 1262 | 1515 | 2.1E-78 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 922 | 1260 | 1.4E-63 | IPR036640 |
| SMART | SM00382 | AAA_5 | 1305 | 1490 | 2.6E-11 | IPR003593 |
| SMART | SM00382 | AAA_5 | 676 | 849 | 8.3E-11 | IPR003593 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1281 | 1513 | 17.740562 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 335 | 615 | 32.955067 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 649 | 872 | 23.202719 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 963 | 1242 | 37.024063 | IPR011527 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 774 | 788 | - | IPR017871 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 888 | 934 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 907 | 934 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 888 | 906 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13080.1 | multidrug resistance-associated protein 3. encodes an ATP-dependent MRP-like ABC transporter able to transport glutathione-conjugates as well as chlorophyll catabolites. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. | 0 |
| RefSeq | XP_008792061.2 | ABC transporter C family member 3-like isoform X1 [Phoenix dactylifera] | 0 |
| Q9LK64 | ABC transporter C family member 3 OS=Arabidopsis thaliana OX=3702 GN=ABCC3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8B7C573 | ABC transporter C family member 3-like isoform X1 OS=Phoenix dactylifera OX=42345 GN=LOC103708769 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology