Basic Information
Locus ID:
gene-LOC103708729
Species & Taxonomic ID:
Phoenix dactylifera & 42345
Genome Assembly:
GCF_009389715.1
Description:
High mobility group
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 27387720 | 27389946 | - | gene-LOC103708729 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.69 | 29,708.60 Da | 42.34 | 72.24 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16872 | ARID_HMGB9-like | 45 | 130 | 1.51285E-40 | - |
| Pfam | PF01388 | ARID/BRIGHT DNA binding domain | 47 | 130 | 7.7E-21 | IPR001606 |
| SUPERFAMILY | SSF46774 | ARID-like | 38 | 143 | 1.57E-30 | IPR036431 |
| Gene3D | G3DSA:1.10.150.60 | - | 28 | 145 | 1.4E-26 | IPR036431 |
| SMART | SM01014 | ARID_2 | 40 | 130 | 5.0E-27 | - |
| SMART | SM00501 | bright_3 | 44 | 135 | 1.3E-25 | IPR001606 |
| ProSiteProfiles | PS51011 | ARID domain profile. | 43 | 134 | 25.366575 | IPR001606 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 230 | 254 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 230 | 263 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 158 | 185 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G76110.1 | HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain. | 0 |
| RefSeq | XP_038979914.1 | high mobility group B protein 9-like [Phoenix dactylifera] | 0 |
| Q9SGS2 | High mobility group B protein 9 OS=Arabidopsis thaliana OX=3702 GN=HMGB9 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8B9A9P4 | high mobility group B protein 9-like OS=Phoenix dactylifera OX=42345 GN=LOC103708729 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology