Basic Information
Locus ID:
gene-LOC103708627
Species & Taxonomic ID:
Phoenix dactylifera & 42345
Genome Assembly:
GCF_009389715.1
Description:
E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin- conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 27172733 | 27198637 | - | gene-LOC103708627 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.19 | 34,389.21 Da | 43.72 | 76.25 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16571 | RING-HC_SIAHs | 49 | 86 | 8.52406E-12 | - |
| Pfam | PF03145 | Seven in absentia protein family | 93 | 291 | 8.6E-79 | IPR018121 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 104 | 295 | 3.53E-49 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 99 | 159 | 1.6E-19 | IPR013083 |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 178 | 292 | 1.7E-35 | IPR008974 |
| ProSiteProfiles | PS51081 | Zinc finger SIAH-type profile. | 104 | 164 | 15.072903 | IPR013010 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 51 | 86 | 8.609239 | IPR001841 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G58040.1 | seven in absentia of Arabidopsis 2. Encodes a RING finger domain containing protein that interacts with AtRAP2.2. | 0 |
| RefSeq | XP_008791866.2 | E3 ubiquitin-protein ligase SINAT2-like isoform X1 [Phoenix dactylifera] | 0 |
| Q9M2P4 | E3 ubiquitin-protein ligase SINAT2 OS=Arabidopsis thaliana OX=3702 GN=SINAT2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8B7C4V4 | RING-type E3 ubiquitin transferase OS=Phoenix dactylifera OX=42345 GN=LOC103708627 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology