Basic Information
Locus ID:
gene-LOC103708603
Species & Taxonomic ID:
Phoenix dactylifera & 42345
Genome Assembly:
GCF_009389715.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 5136225 | 5163101 | - | gene-LOC103708603 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.28 | 66,976.76 Da | 57.72 | 57.62 | -0.74 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16623 | RING-HC_RBR_TRIAD1_like | 134 | 184 | 1.28204E-15 | - |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 203 | 265 | 2.5E-14 | IPR002867 |
| Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 134 | 166 | 2.1E-4 | IPR018957 |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 282 | 329 | 1.4E-9 | IPR002867 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 561 | 588 | 2.82E-6 | IPR036443 |
| SUPERFAMILY | SSF57850 | RING/U-box | 130 | 215 | 4.24E-19 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 284 | 332 | 2.42E-17 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 203 | 272 | 1.01E-12 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 128 | 217 | 1.6E-18 | IPR013083 |
| Gene3D | G3DSA:1.20.120.1750 | - | 261 | 516 | 7.6E-86 | - |
| SMART | SM00547 | zf_4 | 563 | 587 | 2.5E-4 | IPR001876 |
| SMART | SM00647 | ibrneu5 | 203 | 265 | 7.2E-23 | IPR002867 |
| SMART | SM00647 | ibrneu5 | 269 | 339 | 0.042 | IPR002867 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 561 | 588 | 8.095018 | IPR001876 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 134 | 180 | 9.199359 | IPR001841 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 130 | 343 | 51.125214 | IPR044066 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 565 | 584 | - | IPR001876 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 543 | 557 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 536 | 557 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 19 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 30 | 44 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 54 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G65430.1 | IBR domain-containing protein. | 0 |
| RefSeq | XP_038986793.1 | probable E3 ubiquitin-protein ligase ARI8 [Phoenix dactylifera] | 0 |
| Q8W468 | Probable E3 ubiquitin-protein ligase ARI8 OS=Arabidopsis thaliana OX=3702 GN=ARI8 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8B9AS55 | RBR-type E3 ubiquitin transferase OS=Phoenix dactylifera OX=42345 GN=LOC103708603 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology