Basic Information
Locus ID:
gene-LOC103708399
Species & Taxonomic ID:
Phoenix dactylifera & 42345
Genome Assembly:
GCF_009389715.1
Description:
Prokaryotic RING finger family 4
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 205335 | 213008 | + | gene-LOC103708399 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.97 | 42,331.99 Da | 54.70 | 59.14 | -0.64 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16789 | mRING-HC-C3HC5_MGRN1_like---blasttree | 322 | 362 | 7.98706E-28 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 321 | 367 | 4.5E-16 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 322 | 368 | 6.82E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 309 | 372 | 8.2E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 323 | 361 | 4.0E-4 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 323 | 362 | 11.294285 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 49 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 252 | 267 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 247 | 267 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G09770.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_008791523.1 | probable E3 ubiquitin-protein ligase LOG2 [Phoenix dactylifera] | 0 |
| Q9S752 | Probable E3 ubiquitin-protein ligase LOG2 OS=Arabidopsis thaliana OX=3702 GN=LOG2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8B7C4D3 | RING-type E3 ubiquitin transferase OS=Phoenix dactylifera OX=42345 GN=LOC103708399 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology