Basic Information
Locus ID:
gene-LOC103708171
Species & Taxonomic ID:
Phoenix dactylifera & 42345
Genome Assembly:
GCF_009389715.1
Description:
ATP-dependent RNA
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 17384218 | 17398489 | + | gene-LOC103708171 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.98 | 94,965.78 Da | 60.73 | 65.39 | -0.77 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18787 | SF2_C_DEAD | 394 | 523 | 1.17208E-62 | - |
| CDD | cd00201 | WW | 22 | 52 | 7.95739E-5 | IPR001202 |
| Pfam | PF00397 | WW domain | 21 | 51 | 9.1E-7 | IPR001202 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 199 | 369 | 7.7E-48 | IPR011545 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 405 | 514 | 3.6E-33 | IPR001650 |
| SUPERFAMILY | SSF51045 | WW domain | 16 | 54 | 9.85E-9 | IPR036020 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 247 | 530 | 6.84E-75 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 142 | 379 | 3.6E-84 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 380 | 556 | 4.6E-58 | IPR027417 |
| Gene3D | G3DSA:2.20.70.10 | - | 16 | 57 | 1.9E-5 | - |
| SMART | SM00487 | ultradead3 | 194 | 397 | 9.4E-62 | IPR014001 |
| SMART | SM00456 | ww_5 | 20 | 53 | 1.5E-6 | IPR001202 |
| SMART | SM00490 | helicmild6 | 434 | 514 | 1.1E-34 | IPR001650 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 175 | 203 | 11.160657 | IPR014014 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 206 | 380 | 29.855413 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 409 | 553 | 24.909355 | IPR001650 |
| ProSiteProfiles | PS50020 | WW/rsp5/WWP domain profile. | 19 | 53 | 11.211101 | IPR001202 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 326 | 334 | - | IPR000629 |
| ProSitePatterns | PS01159 | WW/rsp5/WWP domain signature. | 25 | 51 | - | IPR001202 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 561 | 764 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 642 | 657 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 602 | 636 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 25 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 70 | 153 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 87 | 108 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 723 | 737 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 112 | 127 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 690 | 708 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 787 | 860 | - | - |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G01540.1 | DEAD box RNA helicase 1. RNA HELICASE DRH1 | 0 |
| RefSeq | XP_008791195.2 | ATP-dependent RNA helicase-like protein DB10 isoform X1 [Phoenix dactylifera] | 0 |
| Q5VQL1 | DEAD-box ATP-dependent RNA helicase 14 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0172200 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8B7C428 | ATP-dependent RNA helicase-like protein DB10 isoform X1 OS=Phoenix dactylifera OX=42345 GN=LOC103708171 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology