Basic Information
Locus ID:
gene-LOC103708153
Species & Taxonomic ID:
Phoenix dactylifera & 42345
Genome Assembly:
GCF_009389715.1
Description:
Belongs to the histone deacetylase family. HD Type 1 subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 17692041 | 17699902 | + | gene-LOC103708153 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.56 | 53,993.09 Da | 47.70 | 71.59 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09991 | HDAC_classI | 40 | 348 | 0.0 | - |
| Pfam | PF00850 | Histone deacetylase domain | 54 | 346 | 2.2E-85 | IPR023801 |
| SUPERFAMILY | SSF52768 | Arginase/deacetylase | 35 | 402 | 2.01E-123 | IPR023696 |
| Gene3D | G3DSA:3.40.800.20 | Histone deacetylase domain | 24 | 414 | 2.7E-136 | IPR037138 |
| PIRSF | PIRSF037913 | HDAC_I_euk | 20 | 474 | 6.2E-204 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 89 | 107 | 9.6E-61 | IPR003084 |
| PRINTS | PR01270 | Histone deacetylase superfamily signature | 198 | 213 | 7.1E-24 | IPR000286 |
| PRINTS | PR01270 | Histone deacetylase superfamily signature | 166 | 189 | 7.1E-24 | IPR000286 |
| PRINTS | PR01271 | Histone deacetylase signature | 261 | 279 | 9.6E-61 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 123 | 140 | 9.6E-61 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 56 | 73 | 9.6E-61 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 144 | 164 | 9.6E-61 | IPR003084 |
| PRINTS | PR01270 | Histone deacetylase superfamily signature | 283 | 293 | 7.1E-24 | IPR000286 |
| PRINTS | PR01271 | Histone deacetylase signature | 244 | 257 | 9.6E-61 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 185 | 201 | 9.6E-61 | IPR003084 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 406 | 485 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 29 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 426 | 454 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 455 | 469 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G63110.1 | histone deacetylase 6. RPD3-like histone deacetylase. HDA6 mutations specifically increase the expression of auxin-responsive transgenes, suggesting a role in transgene silencing. | 0 |
| RefSeq | XP_008791160.2 | histone deacetylase 6 isoform X1 [Phoenix dactylifera] | 0 |
| Q9FML2 | Histone deacetylase 6 OS=Arabidopsis thaliana OX=3702 GN=HDA6 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8B7C409 | Histone deacetylase OS=Phoenix dactylifera OX=42345 GN=LOC103708153 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology