Basic Information
Locus ID:
gene-LOC103708076
Species & Taxonomic ID:
Phoenix dactylifera & 42345
Genome Assembly:
GCF_009389715.1
Short Name:
AFB3
Description:
Transport inhibitor response 1-like protein Os04g0395600
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr14 | 5657114 | 5660330 | - | gene-LOC103708076 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.76 | 64,408.85 Da | 40.05 | 95.97 | -0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF18791 | Transport inhibitor response 1 protein domain | 61 | 107 | 2.6E-24 | IPR041101 |
| Pfam | PF18511 | F-box | 1 | 41 | 1.3E-17 | IPR041567 |
| SUPERFAMILY | SSF81383 | F-box domain | 1 | 36 | 1.57E-6 | IPR036047 |
| SUPERFAMILY | SSF52047 | RNI-like | 42 | 531 | 1.69E-37 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 41 | 575 | 3.3E-181 | IPR032675 |
| Gene3D | G3DSA:1.20.1280.50 | - | 1 | 40 | 7.5E-16 | - |
| SMART | SM00367 | LRR_CC_2 | 475 | 500 | 260.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 426 | 449 | 270.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 124 | 149 | 130.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 366 | 390 | 10.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 309 | 332 | 210.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 283 | 308 | 300.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 99 | 123 | 73.0 | IPR006553 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G26810.1 | auxin signaling F-box 2. | 0 |
| RefSeq | XP_008791063.1 | transport inhibitor response 1-like protein Os04g0395600 [Phoenix dactylifera] | 0 |
| Q7XVM8 | Transport inhibitor response 1-like protein Os04g0395600 OS=Oryza sativa subsp. japonica OX=39947 GN=Os04g0395600 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8B7C3Q6 | transport inhibitor response 1-like protein Os04g0395600 OS=Phoenix dactylifera OX=42345 GN=LOC103708076 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology