Basic Information
Locus ID:
gene-LOC103708053
Species & Taxonomic ID:
Phoenix dactylifera & 42345
Genome Assembly:
GCF_009389715.1
Description:
Alpha mannosidase, middle domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr14 | 6050852 | 6070554 | + | gene-LOC103708053 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.97 | 115,639.68 Da | 41.36 | 84.35 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10810 | GH38N_AMII_LAM_like | 45 | 322 | 1.15655E-178 | - |
| Pfam | PF09261 | Alpha mannosidase middle domain | 363 | 455 | 2.1E-21 | IPR015341 |
| Pfam | PF01074 | Glycosyl hydrolases family 38 N-terminal domain | 46 | 358 | 2.7E-93 | IPR000602 |
| Pfam | PF17677 | Glycosyl hydrolases family 38 C-terminal beta sandwich domain | 904 | 1010 | 4.5E-11 | IPR041147 |
| Pfam | PF07748 | Glycosyl hydrolases family 38 C-terminal domain | 607 | 823 | 1.4E-45 | IPR011682 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 468 | 1013 | 1.57E-142 | IPR011013 |
| SUPERFAMILY | SSF88688 | Families 57/38 glycoside transferase middle domain | 363 | 462 | 5.23E-29 | IPR028995 |
| SUPERFAMILY | SSF88713 | Glycoside hydrolase/deacetylase | 34 | 361 | 4.89E-108 | IPR011330 |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 327 | 405 | 2.4E-32 | IPR037094 |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 406 | 462 | 1.2E-22 | IPR037094 |
| Gene3D | G3DSA:2.70.98.30 | - | 605 | 871 | 5.1E-95 | - |
| Gene3D | G3DSA:2.60.40.1360 | - | 891 | 1016 | 1.1E-35 | - |
| Gene3D | G3DSA:3.20.110.10 | Glycoside hydrolase 38, N terminal domain | 45 | 326 | 3.3E-120 | IPR027291 |
| Gene3D | G3DSA:2.60.40.1180 | - | 483 | 604 | 8.9E-28 | IPR013780 |
| SMART | SM00872 | Alpha_mann_mid_2 | 363 | 437 | 1.5E-23 | IPR015341 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G13980.1 | Glycosyl hydrolase family 38 protein. | 0 |
| RefSeq | XP_008791035.2 | alpha-mannosidase At3g26720 [Phoenix dactylifera] | 0 |
| Q8LPJ3 | Probable alpha-mannosidase At5g13980 OS=Arabidopsis thaliana OX=3702 GN=At5g13980 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8B7C3N1 | Alpha-mannosidase OS=Phoenix dactylifera OX=42345 GN=LOC103708053 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology