Basic Information
Locus ID:
gene-LOC103708001
Species & Taxonomic ID:
Phoenix dactylifera & 42345
Genome Assembly:
GCF_009389715.1
Description:
Prokaryotic RING finger family 4
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 13590403 | 13600678 | - | gene-LOC103708001 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.54 | 40,301.09 Da | 64.20 | 64.83 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16789 | mRING-HC-C3HC5_MGRN1_like---blasttree | 300 | 340 | 1.16832E-23 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 298 | 345 | 2.0E-14 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 295 | 348 | 5.14E-12 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 291 | 349 | 1.0E-15 | IPR013083 |
| SMART | SM00184 | ring_2 | 301 | 339 | 0.002 | IPR001841 |
| PIRSF | PIRSF036836 | SBP1_RNase_bind | 276 | 350 | 1.6E-7 | IPR017066 |
| PIRSF | PIRSF036836 | SBP1_RNase_bind | 50 | 144 | 210.0 | IPR017066 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 301 | 340 | 10.895954 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 72 | 88 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 88 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 27 | 46 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06140.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_026660794.2 | probable E3 ubiquitin-protein ligase LUL4 [Phoenix dactylifera] | 0 |
| Q8LA32 | Probable E3 ubiquitin-protein ligase LUL4 OS=Arabidopsis thaliana OX=3702 GN=LUL4 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8B8J5G3 | RING-type E3 ubiquitin transferase OS=Phoenix dactylifera OX=42345 GN=LOC103708001 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology