Basic Information
Locus ID:
gene-LOC103707986
Species & Taxonomic ID:
Phoenix dactylifera & 42345
Genome Assembly:
GCF_009389715.1
Description:
Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 13955490 | 13990558 | + | gene-LOC103707986 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.83 | 111,046.42 Da | 44.06 | 75.40 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18635 | CD_CMT3_like | 531 | 587 | 4.41283E-33 | - |
| Pfam | PF00145 | C-5 cytosine-specific DNA methylase | 596 | 956 | 8.2E-36 | IPR001525 |
| Pfam | PF00385 | Chromo (CHRromatin Organisation MOdifier) domain | 532 | 585 | 5.0E-11 | IPR023780 |
| Pfam | PF01426 | BAH domain | 285 | 395 | 1.1E-12 | IPR001025 |
| SUPERFAMILY | SSF54160 | Chromo domain-like | 526 | 593 | 5.68E-13 | IPR016197 |
| SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 423 | 957 | 9.04E-78 | IPR029063 |
| Gene3D | G3DSA:2.30.30.490 | - | 219 | 384 | 1.4E-47 | IPR043151 |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 425 | 974 | 5.6E-239 | - |
| Gene3D | G3DSA:3.90.120.10 | DNA Methylase, subunit A, domain 2 | 750 | 923 | 5.6E-239 | - |
| SMART | SM00298 | chromo_7 | 531 | 590 | 1.1E-11 | IPR000953 |
| SMART | SM00439 | BAH_4 | 282 | 399 | 6.9E-20 | IPR001025 |
| ProSiteProfiles | PS50013 | Chromo and chromo shadow domain profile. | 532 | 585 | 12.629901 | IPR000953 |
| ProSiteProfiles | PS51679 | C-5 cytosine-specific DNA methylase (Dnmt) domain profile. | 423 | 964 | 45.699165 | IPR001525 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 282 | 399 | 18.965662 | IPR001025 |
| ProSitePatterns | PS00095 | C-5 cytosine-specific DNA methylases C-terminal signature. | 939 | 957 | - | IPR031303 |
| ProSitePatterns | PS00094 | C-5 cytosine-specific DNA methylases active site. | 602 | 614 | - | IPR018117 |
| ProSitePatterns | PS00598 | Chromo domain signature. | 555 | 575 | - | IPR023779 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 691 | 704 | 2.7E-11 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 424 | 440 | 2.7E-11 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 645 | 659 | 2.7E-11 | IPR001525 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 161 | 198 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 41 | 61 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 47 | 61 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 166 | 183 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 184 | 198 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G19020.2 | - | 0 |
| RefSeq | XP_008790945.1 | DNA (cytosine-5)-methyltransferase CMT2-like isoform X1 [Phoenix dactylifera] | 0 |
| Q5KQL9 | DNA (cytosine-5)-methyltransferase CMT2 OS=Oryza sativa subsp. japonica OX=39947 GN=CMT2 PE=2 SV=2 | 0 | |
| TrEMBL | A0A8B7C3H2 | DNA (cytosine-5-)-methyltransferase OS=Phoenix dactylifera OX=42345 GN=LOC103707986 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology