Basic Information
Locus ID:
gene-LOC103707931
Species & Taxonomic ID:
Phoenix dactylifera & 42345
Genome Assembly:
GCF_009389715.1
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr13 | 6579303 | 6598604 | - | gene-LOC103707931 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.99 | 123,637.20 Da | 41.89 | 83.73 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 449 | 485 | 7.4E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 916 | 950 | 8.5E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 319 | 432 | 4.39E-9 | IPR036322 |
| SUPERFAMILY | SSF51004 | C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase | 891 | 1113 | 1.18E-16 | IPR011048 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 416 | 955 | 1.8E-42 | IPR011047 |
| Gene3D | G3DSA:2.130.10.10 | - | 278 | 537 | 6.9E-32 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 767 | 1105 | 3.0E-30 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 542 | 701 | 1.5E-8 | IPR015943 |
| SMART | SM00320 | WD40_4 | 487 | 528 | 0.0015 | IPR001680 |
| SMART | SM00320 | WD40_4 | 823 | 865 | 79.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 911 | 950 | 8.1E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 399 | 438 | 62.0 | IPR001680 |
| SMART | SM00667 | Lish | 4 | 36 | 9.3E-5 | IPR006594 |
| SMART | SM00320 | WD40_4 | 577 | 617 | 0.83 | IPR001680 |
| SMART | SM00320 | WD40_4 | 531 | 574 | 130.0 | IPR001680 |
| SMART | SM00668 | ctlh | 34 | 92 | 1.7E-13 | IPR006595 |
| SMART | SM00320 | WD40_4 | 444 | 485 | 1.0E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 338 | 377 | 0.006 | IPR001680 |
| SMART | SM00320 | WD40_4 | 868 | 908 | 2.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1000 | 1042 | 17.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1065 | 1097 | 180.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 595 | 626 | 9.639578 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 918 | 952 | 12.881143 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 451 | 487 | 9.739832 | IPR001680 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 34 | 92 | 13.296905 | IPR006595 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 4 | 36 | 10.071995 | IPR006594 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 918 | 952 | 10.706503 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 472 | 486 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 937 | 951 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 707 | 738 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G16830.1 | TOPLESS-related 2. | 0 |
| RefSeq | XP_008790866.2 | protein TPR1 [Phoenix dactylifera] | 0 |
| Q5NBT9 | Protein TPR1 OS=Oryza sativa subsp. japonica OX=39947 GN=TPR1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8B7C3L2 | protein TPR1 OS=Phoenix dactylifera OX=42345 GN=LOC103707931 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology