Basic Information
Locus ID:
gene-LOC103707677
Species & Taxonomic ID:
Phoenix dactylifera & 42345
Genome Assembly:
GCF_009389715.1
Description:
C-terminal to LisH motif.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold000852F | 138757 | 153572 | - | gene-LOC103707677 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.15 | 65,219.42 Da | 44.05 | 90.26 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 264 | 556 | 3.02407E-49 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 263 | 298 | 2.0E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 519 | 556 | 1.6E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 475 | 513 | 0.0078 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 259 | 556 | 2.52E-62 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 524 | 574 | 7.0E-8 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 257 | 523 | 5.7E-57 | IPR015943 |
| SMART | SM00320 | WD40_4 | 388 | 428 | 93.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 347 | 386 | 0.0015 | IPR001680 |
| SMART | SM00320 | WD40_4 | 260 | 299 | 2.6E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 305 | 344 | 8.4E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 430 | 468 | 160.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 472 | 514 | 1.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 517 | 557 | 3.1E-11 | IPR001680 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 94 | 151 | 9.009338 | IPR006595 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 61 | 93 | 7.831292 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 267 | 308 | 13.750016 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 524 | 559 | 11.629227 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 312 | 348 | 10.917412 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 312 | 353 | 14.318126 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 267 | 300 | 11.181047 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 524 | 559 | 14.05078 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 286 | 300 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 544 | 558 | 1.6E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 286 | 300 | 1.6E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 373 | 387 | 1.6E-5 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 33 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G08560.1 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_008790475.1 | WD repeat-containing protein 26 homolog [Phoenix dactylifera] | 0 |
| Q9FNN2 | WD repeat-containing protein 26 homolog OS=Arabidopsis thaliana OX=3702 GN=WDR26 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8B7C2S8 | WD repeat-containing protein 26 homolog OS=Phoenix dactylifera OX=42345 GN=LOC103707677 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology