Basic Information
Locus ID:
gene-LOC103707368
Species & Taxonomic ID:
Phoenix dactylifera & 42345
Genome Assembly:
GCF_009389715.1
Description:
Seven in absentia protein family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 30680094 | 30685108 | + | gene-LOC103707368 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.76 | 39,249.76 Da | 57.00 | 70.98 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16571 | RING-HC_SIAHs | 85 | 123 | 4.54409E-10 | - |
| Pfam | PF03145 | Seven in absentia protein family | 129 | 328 | 3.9E-72 | IPR018121 |
| SUPERFAMILY | SSF57850 | RING/U-box | 78 | 126 | 4.62E-7 | - |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 140 | 332 | 3.6E-38 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 140 | 195 | 4.7E-16 | IPR013083 |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 213 | 328 | 3.0E-31 | IPR008974 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 34 | 139 | 3.4E-8 | IPR013083 |
| ProSiteProfiles | PS51081 | Zinc finger SIAH-type profile. | 140 | 200 | 14.782793 | IPR013010 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 87 | 123 | 9.996021 | IPR001841 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G58040.1 | seven in absentia of Arabidopsis 2. Encodes a RING finger domain containing protein that interacts with AtRAP2.2. | 0 |
| RefSeq | XP_008790054.2 | E3 ubiquitin-protein ligase DIS1-like [Phoenix dactylifera] | 0 |
| Q9M2P4 | E3 ubiquitin-protein ligase SINAT2 OS=Arabidopsis thaliana OX=3702 GN=SINAT2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8B7C249 | RING-type E3 ubiquitin transferase OS=Phoenix dactylifera OX=42345 GN=LOC103707368 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology