Basic Information
Locus ID:
gene-LOC103707353
Species & Taxonomic ID:
Phoenix dactylifera & 42345
Genome Assembly:
GCF_009389715.1
Description:
The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 20301517 | 20304157 | - | gene-LOC103707353 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.97 | 22,671.41 Da | 45.76 | 74.98 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 99 | 151 | 3.13518E-11 | - |
| Pfam | PF12906 | RING-variant domain | 99 | 150 | 1.2E-8 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 93 | 153 | 1.13E-10 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 84 | 160 | 1.3E-15 | IPR013083 |
| SMART | SM00744 | ringv_2 | 98 | 151 | 4.6E-13 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 91 | 157 | 17.830858 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 44 | 58 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 69 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G05830.1 | RING/FYVE/PHD zinc finger superfamily protein. | 0 |
| RefSeq | XP_008790023.3 | E3 ubiquitin-protein ligase MARCHF8-like isoform X1 [Phoenix dactylifera] | 0 |
| TrEMBL | A0A8B7C218 | E3 ubiquitin-protein ligase MARCHF8-like isoform X1 OS=Phoenix dactylifera OX=42345 GN=LOC103707353 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology