Basic Information
Locus ID:
gene-LOC103707285
Species & Taxonomic ID:
Phoenix dactylifera & 42345
Genome Assembly:
GCF_009389715.1
Description:
domain phosphoinositide-interacting protein 3
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr13 | 1897784 | 1909194 | - | gene-LOC103707285 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.18 | 50,389.43 Da | 52.63 | 77.54 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 324 | 355 | 0.0056 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 111 | 434 | 7.33E-34 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 92 | 433 | 5.9E-22 | IPR015943 |
| SMART | SM00320 | WD40_4 | 189 | 224 | 100.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 271 | 311 | 0.048 | IPR001680 |
| SMART | SM00320 | WD40_4 | 103 | 137 | 420.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 314 | 355 | 0.005 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 47 | 65 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 8 | 35 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 70 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G62770.1 | Transducin/WD40 repeat-like superfamily protein. Required for autophagosome formation during nutrient deprivation and senescence. | 0 |
| RefSeq | XP_008789933.2 | autophagy-related protein 18a isoform X1 [Phoenix dactylifera] | 0 |
| Q93VB2 | Autophagy-related protein 18a OS=Arabidopsis thaliana OX=3702 GN=ATG18A PE=1 SV=1 | 0 | |
| TrEMBL | A0A8B7C220 | autophagy-related protein 18a isoform X1 OS=Phoenix dactylifera OX=42345 GN=LOC103707285 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology