Basic Information
Locus ID:
gene-LOC103707121
Species & Taxonomic ID:
Phoenix dactylifera & 42345
Genome Assembly:
GCF_009389715.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 6190256 | 6197021 | + | gene-LOC103707121 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.93 | 59,407.00 Da | 54.63 | 86.10 | -0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13637 | Ankyrin repeats (many copies) | 96 | 147 | 1.3E-11 | - |
| Pfam | PF00023 | Ankyrin repeat | 164 | 182 | 0.0019 | IPR002110 |
| Pfam | PF00023 | Ankyrin repeat | 226 | 253 | 2.3E-5 | IPR002110 |
| Pfam | PF13857 | Ankyrin repeats (many copies) | 268 | 308 | 7.0E-8 | - |
| SUPERFAMILY | SSF48403 | Ankyrin repeat | 64 | 321 | 3.85E-52 | IPR036770 |
| SUPERFAMILY | SSF57850 | RING/U-box | 365 | 423 | 1.87E-7 | - |
| Gene3D | G3DSA:1.25.40.20 | - | 54 | 194 | 2.1E-32 | IPR036770 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 353 | 435 | 3.2E-6 | IPR013083 |
| Gene3D | G3DSA:1.25.40.20 | - | 195 | 340 | 5.1E-26 | IPR036770 |
| SMART | SM00248 | ANK_2a | 268 | 297 | 1.9E-4 | IPR002110 |
| SMART | SM00184 | ring_2 | 366 | 415 | 0.0015 | IPR001841 |
| SMART | SM00248 | ANK_2a | 127 | 156 | 0.01 | IPR002110 |
| SMART | SM00248 | ANK_2a | 225 | 254 | 2.9E-4 | IPR002110 |
| SMART | SM00248 | ANK_2a | 94 | 123 | 1.5E-5 | IPR002110 |
| SMART | SM00248 | ANK_2a | 161 | 192 | 1.2 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 225 | 250 | 11.585487 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 161 | 182 | 9.383383 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 268 | 300 | 11.80799 | IPR002110 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 366 | 416 | 9.863244 | IPR001841 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 225 | 257 | 11.99496 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 127 | 158 | 8.58744 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 127 | 159 | 9.67119 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 161 | 182 | 9.40409 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 94 | 125 | 12.169178 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 268 | 299 | 10.603827 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 94 | 126 | 13.54414 | IPR002110 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 381 | 390 | - | IPR017907 |
| PRINTS | PR01415 | Ankyrin repeat signature | 284 | 298 | 2.2E-5 | IPR002110 |
| PRINTS | PR01415 | Ankyrin repeat signature | 226 | 241 | 2.2E-5 | IPR002110 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G57740.1 | XB3 ortholog 2 in Arabidopsis thaliana. ubiquitin ligase | 0 |
| RefSeq | XP_008789715.2 | probable E3 ubiquitin-protein ligase XBOS32 isoform X1 [Phoenix dactylifera] | 0 |
| Q6KAE5 | Probable E3 ubiquitin-protein ligase XBOS32 OS=Oryza sativa subsp. japonica OX=39947 GN=XBOS32 PE=2 SV=2 | 0 | |
| TrEMBL | A0A8B7C1J6 | probable E3 ubiquitin-protein ligase XBOS32 isoform X1 OS=Phoenix dactylifera OX=42345 GN=LOC103707121 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology