Basic Information
Locus ID:
gene-LOC103706971
Species & Taxonomic ID:
Phoenix dactylifera & 42345
Genome Assembly:
GCF_009389715.1
Description:
SNF2 family N-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold000727F | 165104 | 186270 | + | gene-LOC103706971 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.70 | 134,696.56 Da | 50.00 | 76.93 | -0.51 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18793 | SF2_C_SNF | 1069 | 1174 | 3.5522E-53 | - |
| CDD | cd18008 | DEXDc_SHPRH-like | 475 | 802 | 4.43801E-85 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 1065 | 1164 | 9.0E-15 | IPR001650 |
| Pfam | PF00176 | SNF2 family N-terminal domain | 492 | 879 | 1.7E-65 | IPR000330 |
| Pfam | PF13923 | Zinc finger, C3HC4 type (RING finger) | 918 | 954 | 2.7E-7 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 915 | 978 | 9.23E-12 | - |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 459 | 802 | 1.77E-44 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 810 | 1221 | 1.83E-53 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 969 | 1221 | 1.7E-55 | IPR027417 |
| Gene3D | G3DSA:3.40.50.10810 | - | 566 | 663 | 2.1E-11 | IPR038718 |
| Gene3D | G3DSA:3.40.50.10810 | - | 447 | 536 | 2.2E-11 | IPR038718 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 903 | 968 | 3.1E-12 | IPR013083 |
| Gene3D | G3DSA:3.40.50.10810 | - | 692 | 803 | 2.4E-28 | IPR038718 |
| SMART | SM00490 | helicmild6 | 1081 | 1164 | 5.6E-17 | IPR001650 |
| SMART | SM00184 | ring_2 | 918 | 956 | 1.3E-6 | IPR001841 |
| SMART | SM00487 | ultradead3 | 471 | 781 | 2.4E-27 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 1059 | 1217 | 14.163809 | IPR001650 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 918 | 954 | 10.77793 | IPR001841 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 489 | 764 | 11.94261 | IPR014001 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 933 | 942 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 96 | 116 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 672 | 691 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 63 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 22 | 63 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 82 | 116 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G50410.1 | SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related. | 0 |
| RefSeq | XP_017698455.2 | helicase-like transcription factor CHR28 isoform X1 [Phoenix dactylifera] | 0 |
| Q94BR5 | Helicase-like transcription factor CHR28 OS=Arabidopsis thaliana OX=3702 GN=CHR28 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8B7C164 | helicase-like transcription factor CHR28 isoform X1 OS=Phoenix dactylifera OX=42345 GN=LOC103706971 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology