Basic Information
Locus ID:
gene-LOC103706939
Species & Taxonomic ID:
Phoenix dactylifera & 42345
Genome Assembly:
GCF_009389715.1
Description:
transcriptional corepressor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr18 | 748095 | 764113 | - | gene-LOC103706939 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.34 | 87,193.44 Da | 46.17 | 72.86 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 516 | 801 | 1.24211E-67 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 520 | 552 | 0.06 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 561 | 594 | 8.0E-5 | IPR001680 |
| Pfam | PF08513 | LisH | 10 | 35 | 6.4E-8 | IPR006594 |
| Pfam | PF00400 | WD domain, G-beta repeat | 601 | 638 | 1.9E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 765 | 801 | 0.22 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 683 | 718 | 0.0062 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 513 | 801 | 1.33E-61 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 501 | 654 | 8.3E-35 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 655 | 801 | 1.3E-26 | IPR015943 |
| SMART | SM00320 | WD40_4 | 513 | 552 | 2.3E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 762 | 801 | 0.0053 | IPR001680 |
| SMART | SM00320 | WD40_4 | 721 | 760 | 1.4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 680 | 718 | 1.9E-7 | IPR001680 |
| SMART | SM00667 | Lish | 8 | 40 | 0.0046 | IPR006594 |
| SMART | SM00320 | WD40_4 | 598 | 638 | 2.2E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 555 | 594 | 1.1E-6 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 769 | 801 | 11.5765 | - |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 8 | 40 | 9.196566 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 769 | 801 | 12.313033 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 562 | 594 | 12.413288 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 605 | 647 | 11.64467 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 520 | 561 | 9.171722 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 605 | 640 | 9.493783 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 562 | 594 | 10.337415 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 337 | 352 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 365 | 412 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 326 | 423 | - | - |
| Coils | Coil | Coil | 361 | 381 | - | - |
| Coils | Coil | Coil | 79 | 99 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32700.6 | LEUNIG_homolog. Encodes a WD40 repeat and LUFS domain containing protein that is similar to LUG. Interacts physically with SEUSS and likely functions as part of a repressor complex that represses AG. | 0 |
| RefSeq | XP_008789440.1 | transcriptional corepressor LEUNIG_HOMOLOG isoform X1 [Phoenix dactylifera] | 0 |
| O48847 | Transcriptional corepressor LEUNIG_HOMOLOG OS=Arabidopsis thaliana OX=3702 GN=LUH PE=1 SV=1 | 0 | |
| TrEMBL | A0A8B7C0Y1 | transcriptional corepressor LEUNIG_HOMOLOG isoform X1 OS=Phoenix dactylifera OX=42345 GN=LOC103706939 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology