Basic Information
Locus ID:
gene-LOC103706481
Species & Taxonomic ID:
Phoenix dactylifera & 42345
Genome Assembly:
GCF_009389715.1
Short Name:
NTMC2T2.1
Description:
C2 domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 7820520 | 7831872 | - | gene-LOC103706481 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.78 | 63,873.39 Da | 33.98 | 103.93 | -0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00030 | C2 | 444 | 544 | 8.80457E-28 | - |
| CDD | cd00030 | C2 | 264 | 366 | 7.26323E-25 | - |
| Pfam | PF00168 | C2 domain | 442 | 544 | 3.1E-25 | IPR000008 |
| Pfam | PF00168 | C2 domain | 262 | 366 | 6.6E-22 | IPR000008 |
| Pfam | PF17047 | Synaptotagmin-like mitochondrial-lipid-binding domain | 70 | 248 | 1.6E-14 | IPR039010 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 260 | 392 | 1.71E-29 | IPR035892 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 438 | 561 | 1.04E-32 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 255 | 390 | 1.9E-31 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 425 | 560 | 1.3E-34 | IPR035892 |
| SMART | SM00239 | C2_3c | 263 | 363 | 2.8E-21 | IPR000008 |
| SMART | SM00239 | C2_3c | 443 | 541 | 2.2E-23 | IPR000008 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 243 | 364 | 19.838549 | IPR000008 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 425 | 542 | 21.138159 | IPR000008 |
| ProSiteProfiles | PS51847 | Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. | 67 | 249 | 29.181084 | IPR031468 |
| PRINTS | PR00360 | C2 domain signature | 459 | 471 | 2.9E-5 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 507 | 515 | 2.9E-5 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 485 | 498 | 2.9E-5 | IPR000008 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G05500.1 | Calcium-dependent lipid-binding (CaLB domain) family protein. Encodes a endomembrane-localized synaptotagmin. Synaptotagmin family proteins are calcium sensors that regulate exocytosis in mammalian cells. | 0 |
| RefSeq | XP_008788811.2 | synaptotagmin-5-like isoform X1 [Phoenix dactylifera] | 0 |
| Q8L706 | Synaptotagmin-5 OS=Arabidopsis thaliana OX=3702 GN=SYT5 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8B7BZW3 | synaptotagmin-5-like isoform X1 OS=Phoenix dactylifera OX=42345 GN=LOC103706481 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology