halophFGD

Basic Information

Locus ID: gene-LOC103706209

Species & Taxonomic ID: Phoenix dactylifera & 42345

Genome Assembly: GCF_009389715.1

Description: Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double-strand breaks

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr2	4036405	4039531	+	gene-LOC103706209

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.32	49,548.52 Da	51.30	90.99	-0.10

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00646	F-box domain	64	101	6.1E-7	IPR001810
SUPERFAMILY	SSF81383	F-box domain	56	120	1.09E-6	IPR036047
Gene3D	G3DSA:1.20.1280.50	-	65	105	5.9E-6	-
SMART	SM00256	fbox_2	68	109	3.5E-4	IPR001810

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

KEGG Pathway

KO Term:

K03164 (DNA topoisomerase II [EC:5.6.2.2])

Pathway:

ko01524 (Platinum drug resistance) map01524 (Platinum drug resistance)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G44080.1	F-box family protein with a domain of unknown function (DUF295).
RefSeq	XP_008788470.2	F-box protein SKIP23-like [Phoenix dactylifera]
Swiss-Prot	Q9C6X9	Probable F-box protein At1g44080 OS=Arabidopsis thaliana OX=3702 GN=At1g44080 PE=4 SV=1
TrEMBL	A0A8B7BZE7	F-box protein SKIP23-like OS=Phoenix dactylifera OX=42345 GN=LOC103706209 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Arecaceae	Cocos nucifera	2	scaffold011975G000010, scaffold011975G000020
Arecaceae	Phoenix dactylifera	6	gene-LOC103706177, gene-LOC103706178, gene-LOC103706179 ... gene-LOC103706209, gene-LOC103723998, gene-LOC103724220
Poaceae	Echinochloa crus-galli	5	AH02.1573, BH02.1636, BH03.3027, BH08.1454, CH02.1796
Poaceae	Eleusine coracana subsp. coracana	4	gene-QOZ80_6AG0526740, gene-QOZ80_6AG0526750 ... gene-QOZ80_6BG0480670, gene-QOZ80_6BG0480680
Poaceae	Lolium multiflorum	4	gene-QYE76_007157, gene-QYE76_007159, gene-QYE76_007164 ... gene-QYE76_007166
Poaceae	Oryza coarctata	2	Oco07G000270, Oco07G000280
Poaceae	Oryza sativa	2	LOC_Os04g08500.1, LOC_Os04g08510.1
Poaceae	Sporobolus alterniflorus	4	Chr10G006640, Chr14G009370, Chr18G003570, Chr22G013780
Poaceae	Thinopyrum elongatum	4	Tel5E01G565100, Tel5E01G565200, Tel5E01G565300 ... Tel5E01G566100
Poaceae	Triticum aestivum	3	TraesCS5A02G353100.1.cds1, TraesCS5B02G355300.1.cds1 ... TraesCS5D02G360100.1.cds1
Poaceae	Zea mays	1	Zm00001eb131340_P005
Poaceae	Zoysia macrostachya	1	Zma_g29929