Basic Information
Locus ID:
gene-LOC103706173
Species & Taxonomic ID:
Phoenix dactylifera & 42345
Genome Assembly:
GCF_009389715.1
Description:
Glycosyl hydrolases family 38 C-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 3903454 | 3925468 | + | gene-LOC103706173 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.71 | 112,334.44 Da | 37.91 | 80.71 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10810 | GH38N_AMII_LAM_like | 36 | 312 | 5.95721E-178 | - |
| Pfam | PF17677 | Glycosyl hydrolases family 38 C-terminal beta sandwich domain | 892 | 997 | 4.1E-12 | IPR041147 |
| Pfam | PF01074 | Glycosyl hydrolases family 38 N-terminal domain | 37 | 349 | 1.2E-92 | IPR000602 |
| Pfam | PF07748 | Glycosyl hydrolases family 38 C-terminal domain | 599 | 810 | 1.5E-48 | IPR011682 |
| Pfam | PF09261 | Alpha mannosidase middle domain | 354 | 443 | 1.3E-19 | IPR015341 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 454 | 1000 | 3.61E-146 | IPR011013 |
| SUPERFAMILY | SSF88713 | Glycoside hydrolase/deacetylase | 25 | 351 | 2.49E-111 | IPR011330 |
| SUPERFAMILY | SSF88688 | Families 57/38 glycoside transferase middle domain | 353 | 448 | 1.57E-27 | IPR028995 |
| Gene3D | G3DSA:3.20.110.10 | Glycoside hydrolase 38, N terminal domain | 36 | 315 | 2.3E-119 | IPR027291 |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 316 | 395 | 1.5E-29 | IPR037094 |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 396 | 452 | 2.8E-20 | IPR037094 |
| Gene3D | G3DSA:2.60.40.1180 | - | 460 | 571 | 5.8E-26 | IPR013780 |
| Gene3D | G3DSA:2.70.98.30 | - | 593 | 858 | 7.1E-100 | - |
| Gene3D | G3DSA:2.60.40.1360 | - | 878 | 1000 | 1.1E-33 | - |
| SMART | SM00872 | Alpha_mann_mid_2 | 354 | 428 | 1.7E-21 | IPR015341 |
| ProSiteProfiles | PS51257 | Prokaryotic membrane lipoprotein lipid attachment site profile. | 1 | 18 | 5.0 | - |
| Coils | Coil | Coil | 925 | 945 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G66150.2 | - | 0 |
| RefSeq | XP_038973707.1 | alpha-mannosidase-like isoform X1 [Phoenix dactylifera] | 0 |
| C0HJB3 | Alpha-mannosidase OS=Canavalia ensiformis OX=3823 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8B8ZQE0 | Alpha-mannosidase OS=Phoenix dactylifera OX=42345 GN=LOC103706173 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology