Basic Information
Locus ID:
gene-LOC103705078
Species & Taxonomic ID:
Phoenix dactylifera & 42345
Genome Assembly:
GCF_009389715.1
Description:
E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin- conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 2537575 | 2547442 | - | gene-LOC103705078 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.22 | 33,567.72 Da | 44.39 | 67.58 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16571 | RING-HC_SIAHs | 46 | 84 | 1.29591E-14 | - |
| Pfam | PF03145 | Seven in absentia protein family | 90 | 290 | 1.1E-77 | IPR018121 |
| SUPERFAMILY | SSF57850 | RING/U-box | 31 | 90 | 8.33E-7 | - |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 101 | 293 | 1.18E-41 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 101 | 156 | 9.7E-15 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 5 | 100 | 1.1E-9 | IPR013083 |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 157 | 290 | 2.1E-37 | IPR008974 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 48 | 84 | 9.376395 | IPR001841 |
| ProSiteProfiles | PS51081 | Zinc finger SIAH-type profile. | 101 | 161 | 13.801544 | IPR013010 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G61790.1 | Protein with RING/U-box and TRAF-like domains. | 0 |
| RefSeq | XP_008786897.2 | E3 ubiquitin-protein ligase DIS1-like isoform X1 [Phoenix dactylifera] | 0 |
| Q10L91 | E3 ubiquitin-protein ligase DIS1 OS=Oryza sativa subsp. japonica OX=39947 GN=DIS1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8B7BWQ0 | RING-type E3 ubiquitin transferase OS=Phoenix dactylifera OX=42345 GN=LOC103705078 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology