Basic Information
Locus ID:
gene-LOC103705061
Species & Taxonomic ID:
Phoenix dactylifera & 42345
Genome Assembly:
GCF_009389715.1
Description:
zinc finger, C3HC4 type, domain containing protein, expressed
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 2818397 | 2821349 | + | gene-LOC103705061 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.30 | 35,932.31 Da | 63.64 | 55.09 | -0.77 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16667 | RING-H2_RNF126_like | 189 | 230 | 8.50213E-24 | - |
| Pfam | PF14369 | zinc-ribbon | 5 | 36 | 3.5E-11 | IPR039525 |
| Pfam | PF13639 | Ring finger domain | 188 | 230 | 3.9E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 169 | 236 | 5.74E-22 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 152 | 236 | 8.2E-22 | IPR013083 |
| SMART | SM00184 | ring_2 | 189 | 229 | 1.6E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 189 | 230 | 12.076194 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 290 | 310 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 234 | 277 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 234 | 276 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G40830.1 | RING-H2 finger C1A. Encodes a putative RING-H2 finger protein RHC1a. | 0 |
| RefSeq | XP_008786879.2 | probable E3 ubiquitin-protein ligase RHC1A [Phoenix dactylifera] | 0 |
| O22197 | Probable E3 ubiquitin-protein ligase RHC1A OS=Arabidopsis thaliana OX=3702 GN=RHC1A PE=2 SV=1 | 0 | |
| TrEMBL | A0A8B7BWM0 | RING-type E3 ubiquitin transferase OS=Phoenix dactylifera OX=42345 GN=LOC103705061 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology