Basic Information
Locus ID:
gene-LOC103705037
Species & Taxonomic ID:
Phoenix dactylifera & 42345
Genome Assembly:
GCF_009389715.1
Description:
E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin- conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr17 | 2479528 | 2485654 | - | gene-LOC103705037 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.19 | 34,434.23 Da | 52.64 | 75.49 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03829 | Sina | 172 | 300 | 1.26501E-60 | - |
| CDD | cd16571 | RING-HC_SIAHs | 56 | 94 | 2.67903E-14 | - |
| Pfam | PF03145 | Seven in absentia protein family | 100 | 299 | 6.0E-78 | IPR018121 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 111 | 303 | 9.15E-46 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 50 | 98 | 1.88E-6 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 111 | 164 | 7.2E-16 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 32 | 110 | 1.8E-7 | IPR013083 |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 165 | 299 | 3.5E-37 | IPR008974 |
| ProSiteProfiles | PS51081 | Zinc finger SIAH-type profile. | 111 | 171 | 13.758881 | IPR013010 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 58 | 94 | 9.582937 | IPR001841 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G58040.1 | seven in absentia of Arabidopsis 2. Encodes a RING finger domain containing protein that interacts with AtRAP2.2. | 0 |
| RefSeq | XP_038970672.1 | E3 ubiquitin-protein ligase SINAT2-like [Phoenix dactylifera] | 0 |
| Q9M2P4 | E3 ubiquitin-protein ligase SINAT2 OS=Arabidopsis thaliana OX=3702 GN=SINAT2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8B8ZFQ7 | RING-type E3 ubiquitin transferase OS=Phoenix dactylifera OX=42345 GN=LOC103705037 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology