Basic Information
Locus ID:
gene-LOC103704029
Species & Taxonomic ID:
Phoenix dactylifera & 42345
Genome Assembly:
GCF_009389715.1
Description:
RNA polymerase II C-terminal domain phosphatase-like 2
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 24410584 | 24428457 | - | gene-LOC103704029 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.81 | 82,447.72 Da | 61.07 | 85.96 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03031 | NLI interacting factor-like phosphatase | 249 | 362 | 2.1E-8 | IPR004274 |
| Pfam | PF00035 | Double-stranded RNA binding motif | 528 | 575 | 1.1E-6 | IPR014720 |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 672 | 714 | 1.01E-8 | - |
| SUPERFAMILY | SSF56784 | HAD-like | 127 | 385 | 2.12E-21 | IPR036412 |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 513 | 576 | 3.14E-12 | - |
| Gene3D | G3DSA:3.40.50.1000 | - | 130 | 389 | 2.7E-28 | IPR023214 |
| Gene3D | G3DSA:3.30.160.20 | - | 512 | 579 | 2.4E-9 | - |
| Gene3D | G3DSA:3.30.160.20 | - | 651 | 712 | 9.2E-6 | - |
| SMART | SM00358 | DRBM_3 | 512 | 576 | 3.7E-7 | IPR014720 |
| SMART | SM00358 | DRBM_3 | 644 | 710 | 0.14 | IPR014720 |
| SMART | SM00577 | forpap2 | 192 | 368 | 2.9E-11 | IPR004274 |
| ProSiteProfiles | PS50137 | Double stranded RNA-binding domain (dsRBD) profile. | 511 | 577 | 12.960709 | IPR014720 |
| ProSiteProfiles | PS50137 | Double stranded RNA-binding domain (dsRBD) profile. | 677 | 711 | 10.508802 | IPR014720 |
| ProSiteProfiles | PS50969 | FCP1 homology domain profile. | 133 | 381 | 16.94862 | IPR004274 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 709 | 737 | - | - |
| Coils | Coil | Coil | 692 | 719 | - | - |
| Coils | Coil | Coil | 558 | 578 | - | - |
| Coils | Coil | Coil | 154 | 174 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G01270.1 | carboxyl-terminal domain (ctd) phosphatase-like 2. Encodes CPL2, a carboxyl-terminal domain (CTD) phosphatase that dephosphorylates CTD Ser5-PO4 of the RNA polymerase II complex. Regulates plant growth, stress and auxin responses. | 0 |
| RefSeq | XP_038981055.1 | RNA polymerase II C-terminal domain phosphatase-like 2 [Phoenix dactylifera] | 0 |
| Q5YDB5 | RNA polymerase II C-terminal domain phosphatase-like 2 OS=Arabidopsis thaliana OX=3702 GN=CPL2 PE=1 SV=3 | 0 | |
| TrEMBL | A0A8B9A356 | protein-serine/threonine phosphatase OS=Phoenix dactylifera OX=42345 GN=LOC103704029 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology