Basic Information
Locus ID:
gene-LOC103703910
Species & Taxonomic ID:
Phoenix dactylifera & 42345
Genome Assembly:
GCF_009389715.1
Description:
transcriptional corepressor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 1336311 | 1359890 | + | gene-LOC103703910 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.57 | 87,621.90 Da | 48.75 | 69.28 | -0.53 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 517 | 802 | 1.75144E-62 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 519 | 553 | 0.012 | IPR001680 |
| Pfam | PF08513 | LisH | 10 | 35 | 1.5E-6 | IPR006594 |
| Pfam | PF00400 | WD domain, G-beta repeat | 562 | 595 | 7.3E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 603 | 639 | 2.5E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 685 | 719 | 5.2E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 783 | 802 | 0.031 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 514 | 802 | 1.17E-60 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 500 | 654 | 2.5E-32 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 655 | 802 | 2.7E-29 | IPR015943 |
| SMART | SM00320 | WD40_4 | 514 | 553 | 1.4E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 681 | 719 | 1.7E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 722 | 761 | 1.1 | IPR001680 |
| SMART | SM00320 | WD40_4 | 599 | 639 | 3.8E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 556 | 595 | 2.4E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 642 | 678 | 170.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 763 | 802 | 0.0012 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 688 | 728 | 8.637032 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 770 | 802 | 12.580379 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 563 | 595 | 12.413288 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 521 | 562 | 10.074014 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 606 | 639 | 8.834696 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 563 | 595 | 10.337415 | - |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 8 | 40 | 9.035233 | IPR006594 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 770 | 802 | 11.787407 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 606 | 648 | 10.742378 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 338 | 352 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 369 | 413 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 326 | 352 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 292 | 309 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 292 | 312 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 369 | 425 | - | - |
| Coils | Coil | Coil | 85 | 107 | - | - |
| Coils | Coil | Coil | 368 | 392 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32700.6 | LEUNIG_homolog. Encodes a WD40 repeat and LUFS domain containing protein that is similar to LUG. Interacts physically with SEUSS and likely functions as part of a repressor complex that represses AG. | 0 |
| RefSeq | XP_008785184.2 | transcriptional corepressor LEUNIG_HOMOLOG-like isoform X1 [Phoenix dactylifera] | 0 |
| O48847 | Transcriptional corepressor LEUNIG_HOMOLOG OS=Arabidopsis thaliana OX=3702 GN=LUH PE=1 SV=1 | 0 | |
| TrEMBL | A0A8B9A9H5 | transcriptional corepressor LEUNIG_HOMOLOG-like isoform X1 OS=Phoenix dactylifera OX=42345 GN=LOC103703910 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology