Basic Information
Locus ID:
gene-LOC103703458
Species & Taxonomic ID:
Phoenix dactylifera & 42345
Genome Assembly:
GCF_009389715.1
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 1371510 | 1376833 | + | gene-LOC103703458 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.78 | 74,068.22 Da | 41.65 | 97.51 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 265 | 307 | 2.08703E-27 | - |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 469 | 507 | 8.5E-9 | IPR000225 |
| Pfam | PF04564 | U-box domain | 261 | 331 | 1.4E-20 | IPR003613 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 551 | 589 | 8.2E-5 | IPR000225 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 386 | 425 | 5.5E-8 | IPR000225 |
| SUPERFAMILY | SSF48371 | ARM repeat | 360 | 635 | 8.64E-50 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 258 | 335 | 1.79E-30 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 497 | 662 | 1.9E-19 | IPR011989 |
| Gene3D | G3DSA:1.20.930.20 | - | 18 | 129 | 1.1E-11 | IPR036537 |
| Gene3D | G3DSA:1.25.10.10 | - | 348 | 493 | 1.2E-34 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 261 | 334 | 6.1E-32 | IPR013083 |
| SMART | SM00504 | Ubox_2 | 264 | 327 | 1.5E-33 | IPR003613 |
| SMART | SM00185 | arm_5 | 427 | 467 | 6.4 | IPR000225 |
| SMART | SM00185 | arm_5 | 386 | 426 | 1.1E-4 | IPR000225 |
| SMART | SM00185 | arm_5 | 550 | 590 | 78.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 509 | 549 | 48.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 468 | 508 | 0.0046 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 479 | 521 | 8.8024 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 260 | 334 | 43.177628 | IPR003613 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 438 | 480 | 8.5924 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 397 | 439 | 11.0424 | IPR000225 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 638 | 678 | - | - |
| Coils | Coil | Coil | 109 | 129 | - | - |
| Coils | Coil | Coil | 625 | 646 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G46510.1 | plant U-box 13. Encodes a protein containing a UND, a U-box, and an ARM domain. This protein has E3 ubiquitin ligase activity based on in vitro assays. Can be phosphorylated in vitro by MLPK, ARK1, and ARK2 but not by SD1-29. | 0 |
| RefSeq | XP_017697401.2 | protein spotted leaf 11-like [Phoenix dactylifera] | 0 |
| Q9SNC6 | U-box domain-containing protein 13 OS=Arabidopsis thaliana OX=3702 GN=PUB13 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8B7MTD4 | RING-type E3 ubiquitin transferase OS=Phoenix dactylifera OX=42345 GN=LOC103703458 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology